2f53c99dd16cc36dd899b2c237631b30d95d6bbb
kate
  Wed Sep 9 20:44:58 2020 -0700
Clean-up after track, add make doc. refs #26129

diff --git src/hg/makeDb/outside/covid/covidHgiGwas.as src/hg/makeDb/outside/covid/covidHgiGwas.as
new file mode 100644
index 0000000..63f0a2a
--- /dev/null
+++ src/hg/makeDb/outside/covid/covidHgiGwas.as
@@ -0,0 +1,23 @@
+table covidHgiGwas
+"Meta-analysis from COVID 19 Host Genetics Initiative (covid19hg.org).  BED 9+10 for lollipop display"
+    (
+    string   chrom;            "Reference sequence chromosome or scaffold"
+    uint     chromStart;       "Start position in chrom"
+    uint     chromEnd;         "End position in chrom"
+    string   name;             "dbSNP Reference SNP (rs) identifier or <chromNum>:<pos>"
+    uint     score;            "Score from 0-1000, derived from p-value"
+    char[1]  strand;           "Unused.  Always '.'"
+    uint     thickStart;       "Start position in chrom"
+    uint     thickEnd;         "End position in chrom"
+    uint     color;            "Red (positive effect) or blue (negative). Brightness reflects pvalue"
+    double   effectSize;       "Effect size on log(OR) scale
+    double   effectSizeSE;     "Effect size standard error"
+    double   pValue;           "-log10 p-value"
+    double   pValueHet;        "-log10 p-value from Cochran's Q heterogeneity test"
+    lstring  ref;              "Non-effect allele"
+    lstring  alt;              "Effect allele"
+    double   alleleFreq;       "Allele frequency among the samples"
+    uint     sampleN;          "Total sample size (sum of study sample sizes)"
+    uint     sourceCount;      "Number of studies"
+    double   _effectSizeAbs;   "Effect size on log(OR) scale, abs value for display"
+    )