7a90888a6a5f82e890cddf86cc40023771802d75
abenetpa
  Fri Aug 28 12:08:50 2020 -0700
corrected colors SNV variants refs #24850

diff --git src/hg/makeDb/trackDb/human/clinvar.html src/hg/makeDb/trackDb/human/clinvar.html
index 1785c3e..3adf238 100644
--- src/hg/makeDb/trackDb/human/clinvar.html
+++ src/hg/makeDb/trackDb/human/clinvar.html
@@ -43,35 +43,35 @@
 <b>Mouseover</b> on items shows variant details, clinical interpretation, and associated conditions. 
 Further information on each variant is displayed on the details page by a click onto any variant.
 </p>
 
 <p>
 Entries in the <b>ClinVar CNV track</b> are colored by <b>type of variant</b>:
 <b><font color="da2c37">red for loss</font></b>,
 <b><font color="294eae">blue for gain</font></b>, and
 <b><font color="840876">purple for insertion</font></b>.
 A light to dark color gradient indicates the clinical significance of each variant, with the 
 lightest shade being benign, or others, to the darkest shade being pathogenic.
 </p>
 
 <p>
 Entries in the <b>ClinVar SNVs track</b> are colored by <b>clinical significance</b>:
-<b><font color="red">red for pathogenic</font></b>,
+<b><font color="d20000">red for pathogenic</font></b>,
 <b><font color="000088">dark blue for variant of uncertain significance</font></b>,
-<B><font color="#green">green for benign</font></b>,
+<B><font color="#00d200">green for benign</font></b>,
 <B><font color="#888">dark grey for not provided</font></b>, and
-<B><font color="#ADD8E6">light blue for conflicting</font></b>.
+<B><font color="#8979D4">light blue for conflicting</font></b>.
 </p>
 
 <p>
 Items can be filtered according to the size of the variant, variant type, clinical significance, 
 allele origin, and molecular consequence, using the track <b>Configure</b> options. 
 Each subtrack has separate display controls, as described 
 <a href="https://genome.ucsc.edu/goldenPath/help/multiView.html">here</a>.
 
 <p>For the human genome version hg19: the hg19 genome released by UCSC in 2009 had a 
 mitochondrial genome "chrM" that was not the same as the one later used for most
 databases like ClinVar. As a result, we added the official mitochondrial genome
 in 2020 as "chrMT" and all mitochondrial annotations of ClinVar and most other
 databases are shown on the mitochondrial genome called "chrMT". For full description
 of the issue of the mitochondrial genome in hg19, please see the 
 <a target=_blank href="https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/">README file</a>