ad31a8422ed162cd74ef85599fca749d0d076270 dschmelt Tue Aug 25 16:16:41 2020 -0700 Adding link to hgTracks on barChart.html #23679 diff --git src/hg/htdocs/goldenPath/help/barChart.html src/hg/htdocs/goldenPath/help/barChart.html index 9dbf8b9..070a97f 100755 --- src/hg/htdocs/goldenPath/help/barChart.html +++ src/hg/htdocs/goldenPath/help/barChart.html @@ -35,34 +35,36 @@ <a href="http://www.linuxjournal.com/article/5949" target="_blank">autoSql</a> (<em>.as</em>) schema file defining the fields of the bigBarChart. </p> <p> Below is an example of the barChart format in 'full' visibility mode</p> <p class='text-center'> <img class='text-center' src="../../images/barChartFull.png" alt="BarChart example in full mode" width="883" height="143"> </p> <p> The Squish display mode draws one colored rectangle indicating the category (e.g. tissue) with highest value of the measured metric (e.g. gene expression) if it contributes more than 10% to the total expression, otherwise the chart is colored black. The following image shows the GTEx Genes track in Squish mode; the beige colored item (tissue) has the highest expression in the ACE2 gene and represents more than 10% of total expression. -Click into the chart for more information.</p> +Click into the colored rectange for more information.</p> <p class='text-center'> + <a href="../../cgi-bin/hgTracks?db=hg38&hideTracks=1&knownGene=pack>exGene=squish"> <img class='text-center' src="../../images/barChartSquish.png" alt="BarChart example in squish mode" width="883" height="143"> +</a> </p> <a name=barChart></a> <h2>barChart format definition</h2> <p> The following autoSql definition illustrates the basic schema supporting barChart (and bigBarChart) tracks.</p> <pre><code>table bigBarChart "bigBarChart bar graph display" ( string chrom; "Reference sequence chromosome or scaffold" uint chromStart; "Start position in chromosome" uint chromEnd; "End position in chromosome" string name; "Name or ID of item"