c8eeddec8324662ee7f23caa047c29fb589dc68f
dschmelt
Thu Aug 27 13:24:58 2020 -0700
Code review 26101
diff --git src/hg/htdocs/goldenPath/help/barChart.html src/hg/htdocs/goldenPath/help/barChart.html
index 070a97f..c2cc579 100755
--- src/hg/htdocs/goldenPath/help/barChart.html
+++ src/hg/htdocs/goldenPath/help/barChart.html
@@ -29,35 +29,35 @@
features (i.e. schema customization, and label configuration support), and
is recommended for users who can use command-line tools and have web-accessible data storage. If
you do not have web-accessible data storage, please see the
Hosting section of the Track Hub Help documentation.
barChart format files are converted to bigBarChart files using the program
bedToBigBed
, run with the -as
option to pull in a special
autoSql (.as)
schema file defining the fields of the bigBarChart.
Below is an example of the barChart format in 'full' visibility mode
-The Squish display mode draws one colored rectangle indicating the category (e.g. tissue) +The 'squish' display mode draws one colored rectangle indicating the category (e.g. tissue) with highest value of the measured metric (e.g. gene expression) if it contributes more than 10% to the total expression, otherwise the chart is colored black. The following image shows the GTEx Genes track -in Squish mode; the beige colored item (tissue) has the highest +in 'squish' mode; the beige colored item (tissue) has the highest expression in the ACE2 gene and represents more than 10% of total expression. Click into the colored rectange for more information.
The following autoSql definition illustrates the basic schema supporting barChart (and bigBarChart) tracks.