c8eeddec8324662ee7f23caa047c29fb589dc68f dschmelt Thu Aug 27 13:24:58 2020 -0700 Code review 26101 diff --git src/hg/htdocs/goldenPath/help/barChart.html src/hg/htdocs/goldenPath/help/barChart.html index 070a97f..c2cc579 100755 --- src/hg/htdocs/goldenPath/help/barChart.html +++ src/hg/htdocs/goldenPath/help/barChart.html @@ -29,35 +29,35 @@ features (i.e. schema customization, and label configuration support), and is recommended for users who can use command-line tools and have web-accessible data storage. If you do not have web-accessible data storage, please see the Hosting section of the Track Hub Help documentation. barChart format files are converted to bigBarChart files using the program bedToBigBed, run with the -as option to pull in a special autoSql (.as) schema file defining the fields of the bigBarChart.

Below is an example of the barChart format in 'full' visibility mode

BarChart example in full mode

-The Squish display mode draws one colored rectangle indicating the category (e.g. tissue) +The 'squish' display mode draws one colored rectangle indicating the category (e.g. tissue) with highest value of the measured metric (e.g. gene expression) if it contributes more than 10% to the total expression, otherwise the chart is colored black. The following image shows the GTEx Genes track -in Squish mode; the beige colored item (tissue) has the highest +in 'squish' mode; the beige colored item (tissue) has the highest expression in the ACE2 gene and represents more than 10% of total expression. Click into the colored rectange for more information.

BarChart example in squish mode

barChart format definition

The following autoSql definition illustrates the basic schema supporting barChart (and bigBarChart) tracks.