ab38adb3e68ab9cf4c53d9b0df0ebf46f51ca999 markd Fri Sep 4 11:31:15 2020 -0700 added bigGenePredToGenePred command diff --git src/hg/utils/bigGenePredToGenePred/tests/makefile src/hg/utils/bigGenePredToGenePred/tests/makefile new file mode 100644 index 0000000..93fc7d3 --- /dev/null +++ src/hg/utils/bigGenePredToGenePred/tests/makefile @@ -0,0 +1,21 @@ +kentSrc = ../../../.. +include ../../../../inc/common.mk + +bigGenePredToGenePred = ${DESTBINDIR}/bigGenePredToGenePred +bedToBigBed = ${DESTBINDIR}/bedToBigBed +genePredCheck = ${DESTBINDIR}/genePredCheck + +test: basicTest + + +basicTest: mkout + ${bedToBigBed} -type=bed12+8 -as=${kentSrc}/hg/lib/bigGenePred.as input/basic.bigGpIn input/hg38.sizes output/$@.biggp + ${bigGenePredToGenePred} output/$@.biggp output/$@.gp + ${genePredCheck} -chromSizes=input/hg38.sizes output/basicTest.gp + diff expected/$@.gp output/$@.gp + +mkout: + @${MKDIR} output + +clean: + rm -rf output