03fcdcc33cd21dad46aa78556cdb1d87ce37f144 markd Mon Aug 31 12:17:03 2020 -0700 make gencodeV35Attrs more compatible with older tables diff --git src/hg/lib/gencodeAttrs.as src/hg/lib/gencodeAttrs.as index 0ae76ff..d494b75 100644 --- src/hg/lib/gencodeAttrs.as +++ src/hg/lib/gencodeAttrs.as @@ -1,14 +1,18 @@ table gencodeAttrs "Basic set of attributes associated with all Gencode transcripts." ( string geneId; "Gene identifier" string geneName; "Gene name" string geneType; "BioType of gene" + string unused1; "unused (was geneStatus in wgGencode tracks)" string transcriptId; "Transcript identifier" string transcriptName; "Transcript name" string transcriptType; "BioType of transcript" + string unused2; "unused (was transcriptStatus in wgGencode tracks)" + string unused3; "unused (was havanaGeneId in wgGencode tracks)" + string unused4; "unused (was havanaTranscriptId in wgGencode tracks)" string ccdsId; "CCDS identifier if transcript is in CCDS" int level; "GENCODE level: 1 = experimental confirmed, 2 = manual, 3 = automated" - string proteinId; "Protein identifier (not loaded on many older versions of GENCODE)" string transcriptClass; "high level type of transcript" + string proteinId; "Protein identifier (not loaded on many older versions of GENCODE)" )