4ed7d54dea85dbe61b1f7b4463e833a45d4c1a0e max Fri Sep 4 02:55:59 2020 -0700 toning down endorsement of Cyverse, refs #26170 diff --git src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html index 1cee7a1..a2efb80 100755 --- src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html +++ src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html @@ -953,33 +953,35 @@
  • CyVerse Discovery Environment - lots of space, but can be relatively slow to display
  • Github - files limited to 100MB, but very fast
  • Figshare - not limited and fast, but every file needs to be uploaded individually and cannot be changed. Optimal for very stable links, e.g. in publications.
  • Each of the providers above has a slightly different approach to hosting data for compatibility with the UCSC Genome Browser, and may have different advantages and disadvantages, such as size limitations, usage statistics, and version control integration. Additionally, as previously mentioned, any provider that supports byte-range access will work for hub hosting, and you are not limited to the above sites. Below is a summarized guide for each of the providers mentioned above.

    Hosting Hubs on CyVerse

    CyVerse, previously known as the iPlant Collaborative, is -an NSF funded site created for assisting data scientists with their data storage and compute -needs. CyVerse supports free data hosting and byte-range access to hosted data, making them -perfect for hosting the binary data required for track hubs.

    +an NSF-funded site created for assisting data scientists with their data storage and compute +needs. Data hosting by CyVerse is free for academic groups and they support byte-range access, +so they can be used for track hubs. However, Cyverse is sometimes slow, +and may result in error messages if your hub includes many tracks that are +meant to be shown at the same time by your users.

    In order to host your data on CyVerse, you first must create an account and then use their Discovery Environment to upload data. After creating an account, use the "Upload" and "Simple Upload" buttons to upload files individually as shown below:

    You can also use the command line utility iCommands to facilitate bulk transfer of data (best used for large files in the 2-100 GB range), or use Cyberduck to bulk transfer up to 80 GB of data in one go.