7dc8844af53ddba9a7a62a84e94ad8d5f695c374 abenetpa Fri Oct 2 14:53:56 2020 -0700 added john lopez to credits and dbVar hub data access #25424 diff --git src/hg/makeDb/trackDb/human/dbVarConflict.html src/hg/makeDb/trackDb/human/dbVarConflict.html index 2cd6167..d2c005d 100644 --- src/hg/makeDb/trackDb/human/dbVarConflict.html +++ src/hg/makeDb/trackDb/human/dbVarConflict.html @@ -32,41 +32,40 @@ </p> <p> <b>Mouseover</b> on items indicates genes affected, size, variant type, and allele frequencies (AF). All tracks can be filtered according to the <b>variant length</b>, <b>variant type</b> and <b>variant overlap</b>. This last filter defines four bins within that range from which the user can choose. </p> <h2>Data Access</h2> The raw data can be explored interactively with the <a href="https://genome.ucsc.edu/cgi-bin/hgTables">Table Browser</a>, or the <a href="https://genome.ucsc.edu/cgi-bin/hgIntegrator">Data Integrator</a>. For automated analysis, the data may be queried from our -<a href="https://genome.ucsc.edu/goldenPath/help/api.html">REST API</a>. -</p> - -<p> -The data can also be found directly from the dbVar nstd186 -<a target="_blank" href="https://www.ncbi.nlm.nih.gov/dbvar/content/common_summary/#data_access">data access</a>. -For questions about dbVar track data, please contact <em>dbvar@ncbi.nlm.nih.gov</em>. +<a href="https://genome.ucsc.edu/goldenPath/help/api.html">REST API</a>. The data can also be found +directly from the dbVar nstd186 <a target=_blank +href="https://www.ncbi.nlm.nih.gov/dbvar/content/common_summary/#data_access">data access</a>, as +well as in the <a href="https://genome.ucsc.edu/cgi-bin/hgHubConnect?hgsid=910263067_X3tU6DiJPhKMr71o1h9Zj2K5XQ4u" +>dbVar Track Hub</a>, where additional subtracks are included. For questions about dbVar track +data, please contact <em>dbvar@ncbi.nlm.nih.gov</em>. </p> <h2>Credits</h2> -Thanks to the dbVAR team at NCBI, especially Timothy Hefferon for technical coordination and consultation, -and to Christopher Lee, Anna Benet-Pages, and Maximilian Haeussler of the Genome -Browser team for engineering the track display. +Thanks to the dbVAR team at NCBI, especially John Lopez and Timothy Hefferon for technical +coordination and consultation, and to Christopher Lee, Anna Benet-Pages, and Daniel Schmelter of +the Genome Browser team for engineering the track display. </p> <h2>References</h2> <p> Lappalainen I, Lopez J, Skipper L, Hefferon T, Spalding JD, Garner J, Chen C, Maguire M, Corbett M, Zhou G <em>et al</em>. <a href="https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gks1213" target="_blank"> DbVar and DGVa: public archives for genomic structural variation</a>. <em>Nucleic Acids Res</em>. 2013 Jan;41(Database issue):D936-41. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/23193291" target="_blank">23193291</a>; PMC: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531204/" target="_blank">PMC3531204</a> </p>