7dc8844af53ddba9a7a62a84e94ad8d5f695c374
abenetpa
  Fri Oct 2 14:53:56 2020 -0700
added john lopez to credits and dbVar hub data access #25424

diff --git src/hg/makeDb/trackDb/human/dbVarConflict.html src/hg/makeDb/trackDb/human/dbVarConflict.html
index 2cd6167..d2c005d 100644
--- src/hg/makeDb/trackDb/human/dbVarConflict.html
+++ src/hg/makeDb/trackDb/human/dbVarConflict.html
@@ -1,72 +1,71 @@
 <h2>Description</h2>
 The track <b>NCBI dbVar Curated Common SVs: Conflicts with Pathogenic</b> highlights loci where
 common copy number variants from
 <a target=_blank href="https://www.ncbi.nlm.nih.gov/dbvar/studies/nstd186/">nstd186 (NCBI Curated 
 Common Structural Variants)</a> overlap with structural Variants with clinical assertions,
 submitted to ClinVar by external labs <a target=_blank 
 href="https://www.ncbi.nlm.nih.gov/dbvar/content/var_summary/#nstd102">(Clinical Structural 
 Variants - nstd102)</a>.
 </p>
 
 <p>
 <em>Overlap</em> in the track refers to reciprocal overlap between variants in the <b><em>common</em>
 (NCBI Curated Common Structural Variants)</b> versus <b><em>clinical</em> (ClinVar Long Variants)</b>
 tracks. Reciprocal overlap values can be anywhere from 10% to 100%.
 </p>
 
 <p>
 For more information on the number of variant calls and latest statistics for nstd186 see
 <a target=_blank href="https://www.ncbi.nlm.nih.gov/dbvar/content/common_summary/">Summary of nstd186</a>
 (NCBI Curated Common Structural Variants).
 </p>
 
 <h2>Display Conventions and Configuration</h2>
 
 <p>
 Items in all subtracks follow the same conventions: items are colored by variant type, and are
 based on the dbVar colors described in the
 <a target="_blank" href="https://www.ncbi.nlm.nih.gov/dbvar/content/overview/">dbVar Overview page</a>.
 <b><font color="red">Red</font></b> for copy number loss or deletion,
 <b><font color="blue">blue</font></b> for copy number gain or duplication, and
 <b><font color="#662180">violet</font></b> for copy number variation. 
 </p>
 
 <p>
 <b>Mouseover</b> on items indicates genes affected, size, variant type, and allele frequencies (AF). 
 All tracks can be filtered according to the <b>variant length</b>, <b>variant type</b> and 
 <b>variant overlap</b>. This last filter defines four bins within that range from which the 
 user can choose.
 </p>
  
 
 <h2>Data Access</h2>
 The raw data can be explored interactively with the
 <a href="https://genome.ucsc.edu/cgi-bin/hgTables">Table Browser</a>, or the
 <a href="https://genome.ucsc.edu/cgi-bin/hgIntegrator">Data Integrator</a>. For automated analysis,
 the data may be queried from our
-<a href="https://genome.ucsc.edu/goldenPath/help/api.html">REST API</a>.
-</p>
-
-<p>
-The data can also be found directly from the dbVar nstd186 
-<a target="_blank" href="https://www.ncbi.nlm.nih.gov/dbvar/content/common_summary/#data_access">data access</a>.
-For questions about dbVar track data, please contact <em>dbvar@ncbi.nlm.nih.gov</em>.
+<a href="https://genome.ucsc.edu/goldenPath/help/api.html">REST API</a>. The data can also be found
+directly from the dbVar nstd186 <a target=_blank
+href="https://www.ncbi.nlm.nih.gov/dbvar/content/common_summary/#data_access">data access</a>, as
+well as in the <a href="https://genome.ucsc.edu/cgi-bin/hgHubConnect?hgsid=910263067_X3tU6DiJPhKMr71o1h9Zj2K5XQ4u"
+>dbVar Track Hub</a>, where additional subtracks are included. For questions about dbVar track
+data, please contact <em>dbvar@ncbi.nlm.nih.gov</em>.
 </p>
 
 <h2>Credits</h2>
-Thanks to the dbVAR team at NCBI, especially Timothy Hefferon for technical coordination and consultation,
-and to Christopher Lee, Anna Benet-Pages, and Maximilian Haeussler of the Genome 
-Browser team for engineering the track display.
+Thanks to the dbVAR team at NCBI, especially John Lopez and Timothy Hefferon for technical 
+coordination and consultation, and to Christopher Lee, Anna Benet-Pages, and Daniel Schmelter of 
+the Genome Browser team for engineering the track display.
 </p>
  
 <h2>References</h2>
 <p>
 Lappalainen I, Lopez J, Skipper L, Hefferon T, Spalding JD, Garner J, Chen C, Maguire M, Corbett M,
 Zhou G <em>et al</em>.
 <a href="https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gks1213" target="_blank">
 DbVar and DGVa: public archives for genomic structural variation</a>.
 <em>Nucleic Acids Res</em>. 2013 Jan;41(Database issue):D936-41.
 PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/23193291" target="_blank">23193291</a>; PMC: <a
 href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531204/" target="_blank">PMC3531204</a>
 </p>