972f44485e27c59335c665585715be63a2d224df
galt
  Thu Oct 1 17:40:11 2020 -0700
Adding timeout for gfServer read and write. Hopefully this will fix both the recent problem from Wuhan killing all our translated blat servers, as well as the mysterious hangs which happen occasionally and end up causing the admins to have to restart the server. refs #26285

diff --git src/inc/genoFind.h src/inc/genoFind.h
index f74c209..64966b0 100644
--- src/inc/genoFind.h
+++ src/inc/genoFind.h
@@ -373,19 +373,19 @@
    int minScore, struct gfOutput *out);
 /* Chop up query into pieces, align each in translated space, and stitch back
  * together again as nucleotides. */
 
 struct gfClump *gfPcrClumps(struct genoFind *gf, 
         char *fPrimer, int fPrimerSize, char *rPrimer, int rPrimerSize,
 	int minDistance, int maxDistance);
 /* Find possible PCR hits.  The fPrimer and rPrimer are on opposite strands.
  * Note: unlike clumps from other query functions, PCR clumps from this 
  * function have already had clump->target->start subtracted from 
  * clump->tStart and clump->tEnd so that the coords are relative to that 
  * target sequence (not the collection of all target sequences). */
 
 #define MAXSINGLEPIECESIZE 5000 /* maximum size of a single piece */
 
-#define gfVersion "36x7"	/* Current BLAT version number */
+#define gfVersion "36x8"	/* Current BLAT version number */
 
 #endif /* GENOFIND_H */