a3c7c2078036b9b4de1727fe11bb9baac001369e
hiram
  Mon Sep 28 13:32:18 2020 -0700
now with chromAlias and chromSizes in genomes.txt refs #23891

diff --git src/hg/makeDb/doc/asmHubs/mkHubIndex.pl src/hg/makeDb/doc/asmHubs/mkHubIndex.pl
index 7329586..46f1ad0 100755
--- src/hg/makeDb/doc/asmHubs/mkHubIndex.pl
+++ src/hg/makeDb/doc/asmHubs/mkHubIndex.pl
@@ -284,31 +284,30 @@
            $commonName = $commonName{$asmId} if (exists($commonName{$asmId}));
            $sciName =~ s/.*:\s+//;
            $sciName =~ s/\s+\(.*//;
         }
       } elsif ($line =~ m/Taxid:/) {
         if ($taxId =~ m/notFound/) {
            ++$itemsFound;
            $taxId = $line;
            $taxId =~ s/.*:\s+//;
         }
       }
     }
     close (FH);
     my $hubUrl = "https://hgdownload.soe.ucsc.edu/hubs/$accessionDir/$accessionId";
     printf "<tr><td align=right>%d</td>\n", ++$rowCount;
-###    printf "<td align=center><a href='https://genome.ucsc.edu/cgi-bin/hgGateway?hubUrl=%s/hub.txt&amp;genome=%s&amp;position=lastDbPos' target=_blank>%s</a></td>\n", $hubUrl, $accessionId, $commonName;
     printf "<td align=center><a href='https://genome.ucsc.edu/h/%s' target=_blank>%s</a></td>\n", $accessionId, $commonName;
     printf "    <td align=center><a href='%s/' target=_blank>%s</a></td>\n", $hubUrl, $sciName;
     printf "    <td align=left><a href='https://www.ncbi.nlm.nih.gov/assembly/%s_%s/' target=_blank>%s</a></td>\n", $gcPrefix, $asmAcc, $asmId;
     if ( $bioSample ne "notFound" ) {
     printf "    <td align=left><a href='https://www.ncbi.nlm.nih.gov/biosample/?term=%s' target=_blank>%s</a></td>\n", $bioSample, $bioSample;
     } else {
     printf "    <td align=left>n/a</td>\n";
     }
     # one broken assembly_report
     $bioProject= "PRJEB25768" if ($accessionId eq "GCA_900324465.2");
     if ($bioProject eq "notFound") {
       printf "    <td align=left>%s</td>\n", $bioProject;
     } else {
       printf "    <td align=left><a href='https://www.ncbi.nlm.nih.gov/bioproject/?term=%s' target=_blank>%s</a></td>\n", $bioProject, $bioProject;
     }