0ee03760fe2d6f64e3b87e9a468d1873d179707d jnavarr5 Mon Sep 28 15:03:56 2020 -0700 Replacing double quotes with the HTML entity, refs #22271 diff --git src/hg/makeDb/trackDb/chainNet.html src/hg/makeDb/trackDb/chainNet.html index 2cf4d47..3f20938 100644 --- src/hg/makeDb/trackDb/chainNet.html +++ src/hg/makeDb/trackDb/chainNet.html @@ -1,19 +1,19 @@ <H2>Description</H2> <P> This track shows regions of the genome that are alignable -to other genomes ("chain" subtracks) or in synteny ("net" subtracks). +to other genomes ("chain" subtracks) or in synteny ("net" subtracks). The alignable parts are shown with thick blocks that look like exons. Non-alignable parts between these are shown like introns. </P> <H3>Chain Track</H3> <P> The chain track shows alignments of $o_organism ($o_date) to the $organism genome using a gap scoring system that allows longer gaps than traditional affine gap scoring systems. It can also tolerate gaps in both $o_organism and $organism simultaneously. These "double-sided" gaps can be caused by local inversions and overlapping deletions in both species. <P> The chain track displays boxes joined together by either single or double lines. The boxes represent aligning regions.