486c312a04bb6eaacc345af466b52304bc2fa516
chmalee
  Tue Sep 15 08:48:23 2020 -0700
Change LOVD and DECIPHER release tags for testing on hgwbeta, refs #25841

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index 975d112..8f2b4b8 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -110,51 +110,52 @@
 visibility hide
 color 200,0,0
 type bed 4
 url http://geneticassociationdb.nih.gov/cgi-bin/tableview.cgi?table=allview&cond=gene=
 
 track decipher
 shortLabel DECIPHER CNVs
 longLabel DECIPHER: Chromosomal Imbalance and Phenotype in Humans (CNVs)
 group phenDis
 visibility hide
 color 0,0,0
 type bed 4
 tableBrowser off decipherRaw knownToDecipher knownCanonToDecipher
 prevExonText Left edge
 nextExonText Right edge
+release public
 
 track decipherCnv
 shortLabel Decipher CNV New
 longLabel Decipher CNV New
 group phenDis
 visibility hide
 type bigBed 9 +
 itemRgb on
 tableBrowser off
 bigDataUrl /gbdb/$D/decipher/decipherCnv.bb
 url https://decipher.sanger.ac.uk/patient/$$
 urlLabel Decipher Patient View:
 filter.size 0
 filterByRange.size on
 filterLimits.size 2:170487333
 filterValues.variant_class Amplification,Copy-Number Gain,Deletion,Duplication,Duplication/Trip
 filterValues.pathogenicity Benign,Likely Benign,Likely Pathogenic,Pathogenic,Uncertain,Unknown
 mergeSpannedItems on
 searchIndex name
 mouseOverField _mouseOver
-release alpha
+release alpha,beta
 
 searchTable  decipherCnv
 searchMethod exact
 searchType bigBed
 
 track decipherSnvs
 shortLabel DECIPHER SNVs
 longLabel DECIPHER: Chromosomal Imbalance and Phenotype in Humans (SNVs)
 group phenDis
 visibility hide
 color 0,0,0
 type bed 4
 tableBrowser off decipherSnvsRaw
 prevExonText Left edge
 nextExonText Right edge
@@ -3691,88 +3692,88 @@
         type bigBed 12 +
         release alpha
         bigDataUrl /gbdb/$D/bbi/cancerMutations/BRCA.bb
         urls case_id=https://portal.gdc.cancer.gov/cases/$$
         parent cancerMutations
 
 track lovdComp
 shortLabel LOVD Variants
 longLabel Leiden Open Variation Database Public Variants
 group phenDis
 visibility hide
 compositeTrack on
 type bigBed 4 +
 tableBrowser off lovdComp
 html lovdComp
-release alpha
+release alpha,beta
 
         track lovdShort
         shortLabel LOVD Variants < 50 bp
         longLabel Leiden Open Variation Database, short < 50 bp variants
         group phenDis
         visibility hide
         urls id="http://varcache.lovd.nl/redirect/$$"
         noScoreFilter on
         bigDataUrl /gbdb/$D/lovd/lovd.$D.short.bb
         parent lovdComp
-        release alpha
+        release alpha,beta
 
         track lovdLong
         shortLabel LOVD Variants >= 50 bp
         longLabel Leiden Open Variation Database Public Variants, long >= 50 bp variants
         group phenDis
         visibility hide
         urls id="http://varcache.lovd.nl/redirect/$$"
         noScoreFilter on
         bigDataUrl /gbdb/$D/lovd/lovd.$D.long.bb
         parent lovdComp
-        release alpha
+        release alpha,beta
 
 track lovdComp
 shortLabel LOVD Variants
 longLabel Leiden Open Variation Database Public Variants
 group phenDis
 visibility hide
 compositeTrack on
 type bedDetail
 tableBrowser off lovdComp
 html lovdComp
-release beta,public
+release public
 
         track lovdShort
         shortLabel LOVD Variants < 50bp
         longLabel Leiden Open Variation Database, short < 50bp variants
         group phenDis
         visibility hide
         type bedDetail 6
         url http://varcache.lovd.nl/redirect/$$
         urlLabel Link to LOVD:
         noScoreFilter on
         parent lovdComp
-        release beta,public
+        release public
 
         track lovdLong
         shortLabel LOVD Variants >= 50bp
         longLabel Leiden Open Variation Database Public Variants, long >= 50bp variants
         group phenDis
         visibility hide
         type bedDetail 6
         url http://varcache.lovd.nl/redirect/$$
         urlLabel Link to LOVD:
         noScoreFilter on
         parent lovdComp
-        release beta,public
+        release public
 
 
 track hgmd
 shortLabel HGMD Variants
 longLabel Human Gene Mutation Database Public Variants
 group phenDis
 visibility hide
 itemRgb on
 type bigBed 9 .
 url http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$P&accession=$p
 urlLabel Link to HGMD
 mouseOverField variantType
 tableBrowser off hgmd
 noScoreFilter on
 maxItems 1000