7ec003fc7ae8f5bb327037388ac9ce1031286b01 chmalee Thu Sep 17 12:32:59 2020 -0700 Making lovd long variants a bigBed 9 + so mergeSpannedItems works , refs #25841 diff --git src/hg/utils/otto/lovd/lovd.long.as src/hg/utils/otto/lovd/lovd.long.as new file mode 100644 index 0000000..be656d3 --- /dev/null +++ src/hg/utils/otto/lovd/lovd.long.as @@ -0,0 +1,17 @@ +table lovd +"Leiden Open Variation Database Public Variants" + ( + string chrom; "Chromosome (or contig, scaffold, etc.)" + uint chromStart; "Start position in chromosome" + uint chromEnd; "End position in chromosome" + string name; "Name of item" + uint score; "Score from 0-1000" + char[1] strand; "+ or -" + uint thickStart; "Start of where display should be thick (start codon)" + uint thickEnd; "End of where display should be thick (stop codon)" + uint reserved; "Used as itemRgb as of 2004-11-22" + string id; "Link to LOVD" + string variantEffect; "Variant Effect" + string lovdInstalls; "Number of LOVD installations reporting this variant" + ) +