eae19514329af9e929c1911a6a560a4eb8acb286 dschmelt Fri Sep 11 16:14:09 2020 -0700 Adding GTEx pub to page refs #26199 diff --git src/hg/htdocs/goldenPath/pubs.html src/hg/htdocs/goldenPath/pubs.html index ccf5f2f..b27740f 100755 --- src/hg/htdocs/goldenPath/pubs.html +++ src/hg/htdocs/goldenPath/pubs.html @@ -2,42 +2,50 @@ <!--#set var="TITLE" value="UCSC Genome Browser: Publications" --> <!--#set var="ROOT" value=".." --> <!-- Relative paths to support mirror sites with non-standard GB docs install --> <!--#include virtual="$ROOT/inc/gbPageStart.html" --> <a title="National Human Genome Research Institute [U41-HG002371]"> <h1>Selected Publications</h1> </a> <h6>This page lists publications directly funded by the NHGRI grant to the UCSC Genome Browser. View more publications by Genome Browser staff here: <a href="https://scholar.google.com/citations?view_op=search_authors&hl=en&mauthors=UCSC+Genome+Browser" target="_blank"> <img class="gbsInlineImg" src="../images/googleScholar.png"></a></h6> -<!-- 2019 Publications --> <h2>2020</h2> <!-- pending acceptance https://www.biorxiv.org/content/10.1101/2020.05.04.075945v1 does reference our grant "The UCSC SARS-CoV-2 Genome Browser" --> <!-- pending acceptance https://www.biorxiv.org/content/10.1101/2020.05.22.110833v1 does reference our grant "Towards complete and error-free genome assemblies of all vertebrate species" --> -<p> Fernandes, J.D., Hinrichs, A.S., Clawson, H., Gonzalez JN, Lee BT, Nassar LR, +<p> +Aguet F, Ardlie KG, Lappalainen T, Haueussler M, Kent WJ, Lee CM, Powell CC, Rosenbloom KR, et. al. +<a href="https://science.sciencemag.org/content/369/6509/1318" target="_blank"> +The GTEx Consortium atlas of genetic regulatory effects across human tissues</a> +<em>Science</em>. 2020 Sep;369(6509):1318-1330 + + +<p> +Fernandes, J.D., Hinrichs, A.S., Clawson, H., Gonzalez JN, Lee BT, Nassar LR, Raney BJ, Rosenbloom KR, Nerli S, Rao AA, Schmelter D, Fyfe A, Maulding N, Zweig AS, Lowe TM, Ares M, Corbet-Detig R, Kent WJ, Haussler D, Haeussler M. <a href="https://www.nature.com/articles/s41588-020-0700-8" target="_blank">The UCSC SARS-CoV-2 Genome Browser</a>. <em>Nat Genet</em>. 2020 Sep 9.</p> + <p> Birgmeier J, Deisseroth CA, Hayward LE, Galhardo LMT, Tierno AP, Jagadeesh KA, Stenson PD, Cooper DN, Bernstein JA, Haeussler M <em>et al</em>. <a href="http://dx.doi.org/10.1038/s41436-019-0643-6" target="_blank"> AVADA: toward automated pathogenic variant evidence retrieval directly from the full-text literature</a>. <em>Genet Med</em>. 2020 Feb;22(2):362-370. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/31467448" target="_blank">31467448</a> </p> <p> Fernandes, J.D., Zamudio-Hurtado, A., Clawson, H., Kent WJ., Haussler D., Salama, SR., Haeussler M. <a href="https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-020-00208-w" target="_blank">The UCSC repeat browser allows discovery and visualization of @@ -52,30 +60,31 @@ <em>Cell Biol Toxicol</em>. 2020 Feb;36(1):5-9. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/31734746" target="_blank">31734746</a>; PMC: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7056574/" target="_blank">PMC7056574</a> </p> <p> Lee CM, Barber GP, Casper J, Clawson H, Diekhans M, Gonzalez JN, Hinrichs AS, Lee BT, Nassar LR, Powell CC, Raney BJ, Rosenbloom KR, Schmelter D, Speir ML, Zweig AS, Haussler D, Haeussler M, Kuhn RM, Kent WJ. <a href="https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkz1012" target="_blank"> UCSC Genome Browser enters 20th year</a>. <em>Nucleic Acids Res</em>. 2020 Jan 8;48(D1):D756-D761. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/31691824" target="_blank">31691824</a> </p> +<!-- 2019 Publications --> <h2>2019</h2> <p> Chen W, McKenna A, Schreiber J, Haeussler M, Yin Y, Agarwal V, Noble WS, Shendure J. <a href="https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkz487" target="_blank"> Massively parallel profiling and predictive modeling of the outcomes of CRISPR/Cas9-mediated double- strand break repair</a>. <em>Nucleic Acids Res</em>. 2019 Sep 5;47(15):7989-8003. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/31165867" target="_blank">31165867</a>; PMC: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6735782/" target="_blank">PMC6735782</a> </p> <p> Haeussler M, Zweig AS, Tyner C, Speir ML, Rosenbloom KR, Raney BJ, Lee CM, Lee BT, Hinrichs AS, Gonzalez JN, Gibson D, Diekhans M, Clawson H, Casper J, Barber GP, Haussler D, Kuhn RM, Kent WJ.