27e330737ba88fc3682f401974d8cab1b2fa841b
hiram
  Wed Sep 16 14:02:58 2020 -0700
prototype for new style LRG Fixed Transcript Annotations refs #24672

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index ca02880..3113c20 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -3168,30 +3168,56 @@
 track wgRna
 shortLabel sno/miRNA
 longLabel C/D and H/ACA Box snoRNAs, scaRNAs, and microRNAs from snoRNABase and miRBase
 group genes
 visibility hide
 color 200,80,0
 type bed 8 +
 noScoreFilter .
 urlLabel Laboratoire de Biologie Moleculaire Eucaryote:
 url http://www-snorna.biotoul.fr/plus.php?id=$$
 url2Label miRBase:
 #url2 http://microrna.sanger.ac.uk/cgi-bin/sequences/mirna_entry.pl?id=$$
 url2 http://www.mirbase.org/cgi-bin/query.pl?terms=$$
 dataVersion miRBase Release 13.0 (March 2009) and snoRNABase Version 3
 
+track lrgBigPsl
+shortLabel LRG Transcripts (RM 24672)
+longLabel Locus Reference Genomic (LRG) Fixed Transcript Annotations (RedMine 24672)
+group genes
+visibility hide
+type bigPsl
+mouseOverField mouseOver
+skipFields mouseOver
+skipEmptyFields on
+urls ncbiTranscript=https://www.ncbi.nlm.nih.gov/nuccore/$$ ensemblTranscript=http://www.ensembl.org/Multi/Search/Results?site=ensembl_all;q=$$ ncbiProtein=https://www.ncbi.nlm.nih.gov/protein/$$ ensemblProtein=http://www.ensembl.org/Multi/Search/Results?site=ensembl_all;q=$$
+cdsTable lrgCds
+cdnaTable lrgCdna
+pepTable lrgPep
+baseColorDefault diffCodons
+baseColorUseCds table lrgCds
+baseColorUseSequence table lrgCdna
+indelDoubleInsert on
+indelQueryInsert on
+showDiffBasesAllScales .
+showDiffBasesMaxZoom 10000.0
+showCdsAllScales .
+showCdsMaxZoom 10000.0
+color 54,125,29
+urlLabel Link to LRG transcript:
+url ftp://ftp.ebi.ac.uk/pub/databases/lrgex/$$.xml#transcripts_anchor
+
 track lrgTranscriptAli
 shortLabel LRG Transcripts
 longLabel Locus Reference Genomic (LRG) Fixed Transcript Annotations
 group genes
 visibility hide
 type psl .
 cdsTable lrgCds
 cdnaTable lrgCdna
 pepTable lrgPep
 baseColorDefault diffCodons
 baseColorUseCds table lrgCds
 baseColorUseSequence table lrgCdna
 indelDoubleInsert on
 indelQueryInsert on
 showDiffBasesAllScales .