9174a163b341bfd2dd5c8fe84952265e74bef32a angie Sun Sep 27 23:50:14 2020 -0700 Added setting sampleColorFile so one or more sample coloring schemes can be offered for the tree in VCF+tree tracks. refs #26177 TODO: document the new setting diff --git src/hg/inc/vcfUi.h src/hg/inc/vcfUi.h index bc95548..e4570ea 100644 --- src/hg/inc/vcfUi.h +++ src/hg/inc/vcfUi.h @@ -20,30 +20,32 @@ #define VCF_HAP_METHOD_TREE_FILE "treeFile" #define VCF_DEFAULT_HAP_METHOD VCF_HAP_METHOD_CENTER_WEIGHTED #define VCF_HAP_COLORBY_VAR "hapClusterColorBy" #define VCF_HAP_COLORBY_ALTONLY "altOnly" #define VCF_HAP_COLORBY_FUNCTION "function" #define VCF_HAP_COLORBY_REFALT "refAlt" #define VCF_HAP_COLORBY_BASE "base" #define VCF_DEFAULT_HAP_COLORBY VCF_HAP_COLORBY_ALTONLY #define VCF_HAP_TREEANGLE_VAR "hapClusterTreeAngle" #define VCF_HAP_TREEANGLE_TRIANGLE "triangle" #define VCF_HAP_TREEANGLE_RECTANGLE "rectangle" #define VCF_DEFAULT_HAP_TREEANGLE VCF_HAP_TREEANGLE_TRIANGLE +#define VCF_SAMPLE_COLOR_FILE "sampleColorFile" + #define VCF_SHOW_HW_VAR "showHardyWeinberg" #define VCF_APPLY_MIN_QUAL_VAR "applyMinQual" #define VCF_DEFAULT_APPLY_MIN_QUAL FALSE #define VCF_DO_QUAL_UI "vcfDoQual" #define VCF_MIN_QUAL_VAR "minQual" #define VCF_DEFAULT_MIN_QUAL 0 #define VCF_DO_FILTER_UI "vcfDoFilter" #define VCF_EXCLUDE_FILTER_VAR "excludeFilterValues" #define VCF_DO_MAF_UI "vcfDoMaf" #define VCF_MIN_ALLELE_FREQ_VAR "minFreq"