01befcfd5b461b535ed1a7616a40264e365ec8ce
dschmelt
  Wed Sep 23 17:45:01 2020 -0700
Committing news announcements for COVID GWAS and Trios #26129

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     <div class="col-sm-3">
       <ul>
         <li><a href="#2005">2005 News</a></li>
         <li><a href="#2004">2004 News</a></li>
         <li><a href="#2003">2003 News</a></li>
         <li><a href="#2002">2002 News</a></li>
         <li><a href="#2001">2001 News</a></li>
       </ul>
     </div>
   </div>
 </div>
 
 <!-- ============= 2020 archived news ============= -->
 <a name="2020"></a>
 
+<a name="092520"></a>
+<h2>New data and visualization types: Covid GWAS (Lollypop) and Family Trios (VCF Trios)</h2>
+<h3>Covid GWAS meta-analysis (Lollypop format)</h3>
+<p>
+We are happy to announce the COVID-19 GWAS tracks both popular human genomes 
+(<a href="../../cgi-bin/hgTracksUi?db=hg19&g=covidHgiGwas">GRCh37/hg19</a> and
+<a href="../../cgi-bin/hgTrackUi?db=hg38&g=covidHgiGwas">GRCh38/hg38</a>).
+These tracks show GWAS meta-analyses from the <a href="https://www.covid19hg.org/" target="_blank">
+COVID-19 Host Genetics Initiative (HGI)</a>, a collaborative effort to analyze and share viral host
+genetics reseach. This track brings together data from 26 GWAS studies and aims to identify
+genetic determinants of SARS-CoV-2 infection susceptibility and disease severity.
+</p>
+
+These data are shown in our new Lollypop visualization in order to show the added 
+dimensions of effect size and p-value in addition to location. Filters are also
+available for these variables and the number of studies. For more information on these
+datasets, please read the track description page and try the interactive visualization
+for yourself:</p>
+<ul>
+<li><a href="../../cgi-bin/hgTracksUi?db=hg19&g=covidHgiGwas">GRCh37/hg19</a></li>
+<li><a href="../../cgi-bin/hgTrackUi?db=hg38&g=covidHgiGwas">GRCh38/hg38</a></li>
+</ul>
+
+#PICTURE
+
+<p>Our gratitude goes to the COVID-19 Host Genetics Initiative contributors and project leads for
+making this data available and Kumar Veerapen at the Broad for their input during track
+development. We would also like to thank Kate Rosenbloom, Daniel Schmelter, and Ana Benet for
+developing, staging, and documenting this track.</p>
+
+ 
+<h3>1000 Genomes Family Trios (Phased VCFs)</h3>
+
+
+
+
+
 <a name="091120"></a>
 <h2>Sept. 11, 2020 &nbsp;&nbsp; UCSC LiftOver and NCBI Remap alignments for human (hg38/hg19)</h2>
 <p>
 We are proud to announce the release of UCSC LiftOver and NCBI Remap alignments for human
-(<a href="../../cgi-bin/hgTracks?db=hg19&c=chrX&g=liftHg38">GRCh37/hg19</a> and 
-<a href="../../cgi-bin/hgTracks?db=hg38&c=chrX&g=liftHg19">GRCh38/hg38</a>). These alignments are
+(<a href="../../cgi-bin/hgTrackUi?db=hg19&g=liftHg38">GRCh37/hg19</a> and 
+<a href="../../cgi-bin/hgTrackUi?db=hg38&g=liftHg19">GRCh38/hg38</a>). These alignments are
 contained in a composite track with three subtracks, one for UCSC LiftOver and two for NCBI
 alignments. 
 </p>
 <ul>
   <li>UCSC liftOver alignments to hg19/hg38</li>
   <li>NCBI ReMap alignments to hg19/hg38</li>
   <li>NCBI ReMap alignments to hg19/hg38, joined by axtChain</li>
 </ul>
 <p>
 We would like to thank NCBI for making the ReMap data available and to Angie Hinrichs for the file
 conversion. We would also like to thank Max Haeussler and Jairo Navarro for the development and
 release of these tracks. 
 </p>
 
 <a name="082820"></a>