Commits for jcasper

v406_preview2 to v406_base (2020-10-19 to 2020-10-26) v406

4224a8c96b5c03ed1dc6069e9d80a30aaabcaeee Thu Oct 22 01:38:04 2020 -0700

• Fixing minor URL issue, no ticket
  • src/hg/htdocs/goldenPath/help/trackDb/README.txt - lines changed 1, context: html, text, full: html, text

207d69212eab2b97857769bff4e886c393817db5 Thu Oct 22 01:41:34 2020 -0700

• Documentation for trackDb settings that change the default parameters of a hic track, refs #26312
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html - lines changed 26, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v2.html - lines changed 21, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 66, context: html, text, full: html, text

02f9444f186888d2da5d65d9db583ddf2d7b95ca Thu Oct 22 01:48:20 2020 -0700

• Adding trackDb options to change defaults for hic tracks. Also made some of those settings case-insensitive. refs #26312
  • src/hg/inc/hicUi.h - lines changed 10, context: html, text, full: html, text
  • src/hg/lib/hicUi.c - lines changed 58, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 4, context: html, text, full: html, text
  • src/inc/common.h - lines changed 7, context: html, text, full: html, text
  • src/inc/htmlColor.h - lines changed 6, context: html, text, full: html, text
  • src/lib/common.c - lines changed 15, context: html, text, full: html, text
  • src/lib/htmlColor.c - lines changed 19, context: html, text, full: html, text

43d0ad2887d6554d8a5478cda9a145e142ff1d68 Thu Oct 22 02:23:26 2020 -0700

• Adding anchors to a few new trackDb settings, refs #26312
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v2.html - lines changed 5, context: html, text, full: html, text

e95480c10bf8352b320f2cd209fdbb53750765ca Fri Oct 23 15:48:47 2020 -0700

• Revising autoScale documentation after advice, refs #26312
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html - lines changed 2, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v2.html - lines changed 2, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 37, context: html, text, full: html, text

98d6fb247a79e7a09337fdfb0bbdaaa6e4b3e0ba Fri Oct 23 15:53:01 2020 -0700

• Fixing color=0,0,0 being ignored for hic tracks, refs #26312
  • src/hg/lib/customTrack.c - lines changed 1, context: html, text, full: html, text

98c00541ab52088a538da6ace320aa49b4789fe3 Sun Oct 25 01:11:45 2020 -0700

• Installing updated hg.conf files from UCSC servers
  • confs/asia.hg.conf - lines changed 3, context: html, text, full: html, text
  • confs/euro.hg.conf - lines changed 3, context: html, text, full: html, text
  • confs/rr.hg.conf - lines changed 3, context: html, text, full: html, text