1f0c31eb2d7c7c6528e7414cf804e969e4185324 abenetpa Fri Oct 9 01:15:22 2020 -0700 corrected table browser output results description refs #18419 diff --git src/hg/makeDb/trackDb/human/omimGene2.html src/hg/makeDb/trackDb/human/omimGene2.html index 84dd7c3..6f73a1a 100644 --- src/hg/makeDb/trackDb/human/omimGene2.html +++ src/hg/makeDb/trackDb/human/omimGene2.html @@ -161,31 +161,31 @@

Example: Retrieve phenotype, Mode of Inheritance, and other OMIM data within a range

  1. Go to Table Browser, make sure the right dataset is selected: group: Phenotype and Literature, track: OMIM Genes, table: omimGene2.
  2. Define region of interest by entering coordinates or a gene symbol into the "Position" textbox, such as chr1:11,166,591-11,322,608 or MTOR, or upload a list.
  3. Format your data by setting the "Output format" dropdown to "selected fields from primary and related Tables" and click . This brings up the data field and linked table selection page.
  4. Select chrom, chromStart, chromEnd, and name from omimGene2 table. Then select the related tables omim2gene and omimPhenotype and click . This brings up the fields of the linked tables, where you can select approvedGeneSymbol, omimID, description, omimPhenotypeMapKey, and inhMode.
  5. Click on the to proceed to the results page: -
    chr1	11166591	11322608	MTOR	601231,	Smith-Kingsmore syndrome,Focal cortical dysplasia, type II, somatic,	3,	Autosomal dominant
+
chr1	11166591	11322608    601231  Gene: MTOR, Synonyms: FRAP1, SKS, Phenotypes: Smith-Kingsmore syndrome, AD, 3; Focal cortical dysplasia, type II, somatic, 3

For a quick link to pre-fill these options, click this session link.

Credits

Thanks to OMIM and NCBI for the use of their data. This track was constructed by Fan Hsu, Robert Kuhn, and Brooke Rhead of the UCSC Genome Bioinformatics Group.

References

Amberger J, Bocchini CA, Scott AF, Hamosh A. McKusick's Online Mendelian Inheritance in Man (OMIM).