1f0c31eb2d7c7c6528e7414cf804e969e4185324 abenetpa Fri Oct 9 01:15:22 2020 -0700 corrected table browser output results description refs #18419 diff --git src/hg/makeDb/trackDb/human/omimGene2.html src/hg/makeDb/trackDb/human/omimGene2.html index 84dd7c3..6f73a1a 100644 --- src/hg/makeDb/trackDb/human/omimGene2.html +++ src/hg/makeDb/trackDb/human/omimGene2.html @@ -161,31 +161,31 @@ <h4>Example: Retrieve phenotype, Mode of Inheritance, and other OMIM data within a range</h4> <ol> <li>Go to <a href="hgTables">Table Browser</a>, make sure the right dataset is selected: group: Phenotype and Literature, track: OMIM Genes, table: <tt>omimGene2</tt>.</li> <li>Define region of interest by entering coordinates or a gene symbol into the "Position" textbox, such as chr1:11,166,591-11,322,608 or MTOR, or upload a list.</li> <li>Format your data by setting the "Output format" dropdown to "selected fields from primary and related Tables" and click <button>get output</button>. This brings up the data field and linked table selection page.</li> <li>Select chrom, chromStart, chromEnd, and name from <tt>omimGene2</tt> table. Then select the related tables <tt>omim2gene</tt> and <tt>omimPhenotype</tt> and click <button>allow selection from check tables</button>. This brings up the fields of the linked tables, where you can select approvedGeneSymbol, omimID, description, omimPhenotypeMapKey, and inhMode. </li> <li>Click on the <button>get output</button> to proceed to the results page: -<pre>chr1 11166591 11322608 MTOR 601231, Smith-Kingsmore syndrome,Focal cortical dysplasia, type II, somatic, 3, Autosomal dominant</pre></li></ol> +<pre>chr1 11166591 11322608 601231 Gene: MTOR, Synonyms: FRAP1, SKS, Phenotypes: Smith-Kingsmore syndrome, AD, 3; Focal cortical dysplasia, type II, somatic, 3 </pre></li></ol> <p>For a quick link to pre-fill these options, click <a href="hgTables?hgS_doOtherUser=submit&hgS_otherUserName=dschmelt&hgS_otherUserSessionName=omimPhenotypeTableBrowserEx19"> this session link</a>. <H2>Credits</H2> <P> Thanks to OMIM and NCBI for the use of their data. This track was constructed by Fan Hsu, Robert Kuhn, and Brooke Rhead of the UCSC Genome Bioinformatics Group.</P> <H2>References</H2> <p> Amberger J, Bocchini CA, Scott AF, Hamosh A. <a href="https://academic.oup.com/nar/article/37/suppl_1/D793/1003813" target="_blank"> McKusick's Online Mendelian Inheritance in Man (OMIM)</a>.