7355201a77e934e6e7f28242d4beb15d694e7c8d
braney
  Sun Oct 11 13:21:05 2020 -0700
initial work on Clinvar Submissions track #26330

diff --git src/hg/lib/clinvarSub.as src/hg/lib/clinvarSub.as
new file mode 100644
index 0000000..d4ec60c
--- /dev/null
+++ src/hg/lib/clinvarSub.as
@@ -0,0 +1,17 @@
+table clinvarSub
+"ClinVar variant submission info"
+    (
+    int varId index;   "the identifier assigned by ClinVar and used to build the URL, namely https://ncbi.nlm.nih.gov/clinvar/VariationID"
+    string clinSign; "interpretation of the variation-condition relationship"
+    string dateLastEval;  "the last date the variation-condition relationship was evaluated by this submitter"
+    lstring description; "an optional free text description of the basis of the interpretation"
+    lstring subPhenoInfo; "the name(s) or identifier(s)  submitted for the condition that was interpreted relative to the variant"
+    lstring repPhenoInfo; "the MedGen identifier/name combinations ClinVar uses to report the condition that was interpreted. 'na' means there is no public identifer in MedGen for the condition."
+    string revStatus; "the level of review for this submission, namely http//www.ncbi.nlm.nih.gov/clinvar/docs/variation_report/#review_status"
+    string collMethod;"the method by which the submitter obtained the information provided"
+    string originCounts; "origin and the number of observations for each origin"
+    string submitter; "the submitter of this record"
+    string scv; "the accession and current version assigned by ClinVar to the submitted interpretation of the variation-condition relationship"
+    string subGeneSymbol; "the gene symbol reported in this record"
+    lstring explOfInterp; "more details if ClinicalSignificance is 'other' or 'drug response'"
+    )