3f4772e689c620fa0db33a2522e362cdcc216047
braney
  Sat Oct 17 07:24:30 2020 -0700
almost done with the clinvar submissions track!

diff --git src/hg/makeDb/trackDb/human/trackDb.clinvar.ra src/hg/makeDb/trackDb/human/trackDb.clinvar.ra
index ef1fc51..da922eb 100644
--- src/hg/makeDb/trackDb/human/trackDb.clinvar.ra
+++ src/hg/makeDb/trackDb/human/trackDb.clinvar.ra
@@ -52,22 +52,45 @@
         filterLabel._originCode Alelle Origin
         filterValues._allTypeCode INS|insertion - INS,DEL|deletion - DEL,INDEL|insertion-deletion - INDEL,dupl|duplication - DUPL,OTH|other - OTH
         filterType._allTypeCode singleList
         filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,UC|uncertain,OT|other
         filterType._clinSign singleList
         filter._varLen 50:999999999
         filterByRange._varLen on
         filterLimits._varLen 50:999999999
         mouseOverField _mouseOver
         bigDataUrl /gbdb/$D/bbi/clinvar/clinvarCnv.bb
         mergeSpannedItems on
         urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"
         noScoreFilter on
         searchIndex _dbVarSsvId
 
+        track clinvarSubLolly
+        parent clinvar
+        shortLabel ClinVar SNVs interp
+        longLabel ClinVar SNVs submitted interpretations and evidence
+        bigDataUrl /gbdb/$D/clinvarSubLolly/clinvarSubLolly.bb
+        xrefDataUrl /gbdb/$D/clinvarSubLolly/clinvarSub.bb
+        type bigLolly
+        group phenDis
+        lollySizeField 10
+        yNumLabels off
+        noStems on
+        configurable off
+        yLabel.0 0 on 150,150,150 OTH
+        yLabel.1 1 on 150,150,150 B
+        yLabel.2 2 on 150,150,150 LB
+        yLabel.3 3 on 150,150,150 VUS
+        yLabel.4 4 on 150,150,150 LP
+        yLabel.5 5 on 150,150,150 P
+        lollyMaxSize 10
+        viewLimits 0:5
+        mouseOverField _mouseOver
+        urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"
+
 searchTable clinvarCnv
 searchType bigBed
 searchDescription ClinVar Copy Number Variants 
 
 searchTable clinvarMain
 searchType bigBed
 searchDescription ClinVar Copy Number Variants