051fd339b2b278737722f62cf65dee1517ce20d9 dschmelt Tue Oct 13 14:27:00 2020 -0700 typo fix and style matching refs #26321 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index fdb819b..63a8744 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -43,67 +43,67 @@ <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2020 archived news ============= --> <a name="2020"></a> <a name="101320"></a> <h2>Oct 13. 2020 Updated clinical tracks and features: LOVD, Decipher, and GeneReviews</h2> <p> -We have updated three clinical tracks to add additional features. +We have updated three clinical tracks to add three ease-of-use features. Decipher and LOVD Copy Number Variant (CNV) tracks now have the option to "Merge items that span the current region", collapsing items that are annotated across the entire Genome Browser visible region. Decipher now includes options to filter by Pathogenicity and Variant Class. GeneReviews now has a simple mouse-over which shows gene symbol and disease associations.<p> <ul> <li><a href="/cgi-bin/hgTrackUi?db=hg38&g=lovdComp">LOVD</a> (<a href="/cgi-bin/hgTrackUi?db=hg38&g=lovdComp">hg38</a>/ <a href="/cgi-bin/hgTrackUi?db=hg19&g=lovdComp">hg19</a>)</li> <li><a href="/cgi-bin/hgTrackUi?db=hg19&g=decipher">Decipher</a> (<a href="/cgi-bin/hgTrackUi?db=hg19&g=decipher">hg19</a>)</li> <li><a href="/cgi-bin/hgTrackUi?db=hg38&g=geneReviews">GeneReviews</a> (<a href="/cgi-bin/hgTrackUi?db=hg38&g=geneReviews">hg38</a>/ <a href="/cgi-bin/hgTrackUi?db=hg19&g=geneReviews">hg19</a>/<a href="/cgi-bin/hgTrackUi?db=hg18&g=geneReviews">hg18</a>)</li> </ul> <p> Thank you to the LOVD, Decipher, and GeneReviews teams for their curation of those high-quality datasets. Thank you Genome Browser staff Kate Rosenbloom, Chris Lee, -and Daniel Schmelter for developing and releasing these feautre updates.</p> +Anna Benet-Pages, and Daniel Schmelter for developing and releasing these +feature updates.</p> <a name="100520"></a> <h2>Oct. 5, 2020 New dbVar Common Structural Variants track</h2> <p> We are happy to release the dbVar composite tracks, providing a curated resource for structural variant datasets on human GRCh37/hg19 and GRCh38/hg38 genome assemblies. The track aggregates data from more than one hundred sources including Gnomad, 1000 Genomes Consortium, and Decipher from the <a href="https://www.ncbi.nlm.nih.gov/dbvar/content/overview/" target="_blank">dbVar, the database of Structural Variation from NCBI</a>. The Common Structural Variants track shows variants that meet the following criteria: more than 50 basepairs, occur in at least 100 samples, and have an allele frequency of >=0.01 in at least one population. For more information, please see the track description page:</p> <ul> -<li><a href="/cgi-bin/hgTrackUi?db=hg38&g=dbVarSv">dbVar Structural Variant track on hg38</a></li> -<li><a href="/cgi-bin/hgTrackUi?db=hg19&g=dbVarSv">dbVar Structural Variant track on hg19</a></li> +<li><a href="/cgi-bin/hgTrackUi?db=hg38&g=dbVarSv">dbVar Structural Variants </a> (<a href="/cgi-bin/hgTrackUi?db=hg38&g=dbVarSv">hg38</a>/<a href="/cgi-bin/hgTrackUi?db=hg19&g=dbVarSv">hg19</a>)</li> </ul> <p> We thank the dbVar team at NCBI, especially John Lopez and Tim Hefferon for technical coordination and consultation, and to Chris Lee, Anna Benet-Pages, and Daniel Schmelter of the Genome Browser team for developing, and releasing this track. </p> <a name="100120"></a> <h2>Oct. 1, 2020 New video: Making links to the Genome Browser. Part 3: Composite tracks, custom tracks and spreadsheets </h2> <p> We are happy to announce another release to the UCSC Genome Browser <a href = "https://bit.ly/ucscVideos" target = _blank>YouTube channel</a>.