a0dfc3a56c887efe60287e2f9ff43c9132592c98 dschmelt Tue Oct 13 11:56:59 2020 -0700 Creating announcements for refs #26321 and refs #25841 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 45795a1..fdb819b 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -40,30 +40,54 @@ <div class="col-sm-3"> <ul> <li><a href="#2005">2005 News</a></li> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2020 archived news ============= --> <a name="2020"></a> +<a name="101320"></a> +<h2>Oct 13. 2020 Updated clinical tracks and features: LOVD, Decipher, and GeneReviews</h2> +<p> +We have updated three clinical tracks to add additional features. +Decipher and LOVD Copy Number Variant (CNV) tracks now have the option to +"Merge items that span the current region", collapsing items that +are annotated across the entire Genome Browser visible region. Decipher now +includes options to filter by Pathogenicity and Variant Class. GeneReviews now +has a simple mouse-over which shows gene symbol and disease associations.<p> + +<ul> +<li><a href="/cgi-bin/hgTrackUi?db=hg38&g=lovdComp">LOVD</a> +(<a href="/cgi-bin/hgTrackUi?db=hg38&g=lovdComp">hg38</a>/ +<a href="/cgi-bin/hgTrackUi?db=hg19&g=lovdComp">hg19</a>)</li> +<li><a href="/cgi-bin/hgTrackUi?db=hg19&g=decipher">Decipher</a> +(<a href="/cgi-bin/hgTrackUi?db=hg19&g=decipher">hg19</a>)</li> +<li><a href="/cgi-bin/hgTrackUi?db=hg38&g=geneReviews">GeneReviews</a> (<a href="/cgi-bin/hgTrackUi?db=hg38&g=geneReviews">hg38</a>/ +<a href="/cgi-bin/hgTrackUi?db=hg19&g=geneReviews">hg19</a>/<a href="/cgi-bin/hgTrackUi?db=hg18&g=geneReviews">hg18</a>)</li> +</ul> +<p> +Thank you to the LOVD, Decipher, and GeneReviews teams for their curation of those +high-quality datasets. Thank you Genome Browser staff Kate Rosenbloom, Chris Lee, +and Daniel Schmelter for developing and releasing these feautre updates.</p> + <a name="100520"></a> <h2>Oct. 5, 2020 New dbVar Common Structural Variants track</h2> <p> We are happy to release the dbVar composite tracks, providing a curated resource for structural variant datasets on human GRCh37/hg19 and GRCh38/hg38 genome assemblies. The track aggregates data from more than one hundred sources including Gnomad, 1000 Genomes Consortium, and Decipher from the <a href="https://www.ncbi.nlm.nih.gov/dbvar/content/overview/" target="_blank">dbVar, the database of Structural Variation from NCBI</a>. The Common Structural Variants track shows variants that meet the following criteria: more than 50 basepairs, occur in at least 100 samples, and have an allele frequency of >=0.01 in at least one population. For more information, please see the track description page:</p> <ul> <li><a href="/cgi-bin/hgTrackUi?db=hg38&g=dbVarSv">dbVar Structural Variant track on hg38</a></li>