093ec075d6dd84496e38c5f5f110bf4b4c54298b hiram Tue Oct 13 11:14:51 2020 -0700 begin bacteria hub with an E. coli requested by user refs #26347 diff --git src/hg/makeDb/doc/bacteriaAsmHub/makefile src/hg/makeDb/doc/bacteriaAsmHub/makefile new file mode 100644 index 0000000..ab21949 --- /dev/null +++ src/hg/makeDb/doc/bacteriaAsmHub/makefile @@ -0,0 +1,26 @@ + +## makefile definitions for the 'bacteria' assembly hubs + +# these names trigger special behavior in the index page creation scripts: +Name=Bacteria +name=bacteria + +destDir=/hive/data/genomes/asmHubs/${name} +srcDir=${HOME}/kent/src/hg/makeDb/doc/${name}AsmHub +orderList=$(CURDIR)/${name}.orderList.tsv + +indexName=index +testIndexName=testIndex +statsName=asmStats +testStatsName=testAsmStats +dataName=trackData +testDataName=testTrackData +genomesTxt=genomes +hubFile=hub +testHubFile=testHub +hubTxtFile=hub.txt + +# E. coli K-12 MG1655 +defaultAssembly=GCF_000005845.2_ASM584v2 + +include ../asmHubs/asmHubs.mk