9767ea420ca35a45c6ed2c81f7bc7fde1ca30373 hiram Thu Oct 15 09:22:16 2020 -0700 adding more bigZips files for genes gtf files, and clarify wild card expansion ro redmine diff --git src/hg/utils/automation/makePushQSql.pl src/hg/utils/automation/makePushQSql.pl index f912c3a..d0dbe35 100755 --- src/hg/utils/automation/makePushQSql.pl +++ src/hg/utils/automation/makePushQSql.pl @@ -146,31 +146,31 @@ $entry{'priority'} = 0; # Look for the usual set of files on $dbHost: my $SameSpecies = ucfirst($db); $SameSpecies =~ s/\d+$//; my $sameSpecies = $db; $sameSpecies =~ s/\d+$//; my $Db = ucfirst($db); # 2017-03-02 - remove gc5Base.wib quality.wib quality.bw # rarely, if ever, used any more my @gbdbFiles = map {"$HgAutomate::gbdb/$db/$_"} ("$db.2bit", 'html/description.html', "bbi/gc5BaseBw/gc5Base.bw", "ncbiRefSeq/ncbiRefSeqVersion.txt", "ncbiRefSeq/ncbiRefSeqOther.bb", "ncbiRefSeq/ncbiRefSeqOther.ix", "ncbiRefSeq/ncbiRefSeqOther.ixx", "ncbiRefSeq/seqNcbiRefSeq.rna.fa", "liftOver/${db}To$SameSpecies*"); my @otherGbdbFiles = map {"$HgAutomate::gbdb/${sameSpecies}*/$_"} ("liftOver/${sameSpecies}*To$Db.over.chain.gz"); my @goldenPathFiles = map {"$HgAutomate::goldenPath/$db/$_"} - (qw( bigZips/* database/* chromosomes/* ), + (qw( bigZips/genes/* bigZips/*.gz bigZips/*.sizes bigZips/*.2bit bigZips/*.txt database/* chromosomes/* ), "liftOver/${db}To$SameSpecies*"); my @otherGoldenPathFiles = map {"$HgAutomate::goldenPath/${sameSpecies}*/$_"} ("liftOver/${sameSpecies}*To$Db.over.chain.gz"); my $sciUnderscore = &HgAutomate::getSpecies($dbHost, $db); $sciUnderscore =~ s/ /_/g; my $gatewayPhoto = "$HgAutomate::images/$sciUnderscore.jpg"; if (! &HgAutomate::machineHasFile($dbHost, $gatewayPhoto)) { $gatewayPhoto = "$HgAutomate::images/$sciUnderscore.gif"; } my @files = (); foreach my $f (@gbdbFiles, @otherGbdbFiles, @goldenPathFiles, @otherGoldenPathFiles, $gatewayPhoto) { if (&HgAutomate::machineHasFile($dbHost, $f)) { push @files, $f;