54d691020387ee93fee9cfeede5637dc002dbe92 lrnassar Thu Oct 15 16:50:46 2020 -0700 Announcing ensembl v101 update refs #26145 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 63a8744..326d47a 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -40,30 +40,148 @@ <div class="col-sm-3"> <ul> <li><a href="#2005">2005 News</a></li> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2020 archived news ============= --> <a name="2020"></a> +<a name="101520"></a> +<h2>Oct. 15, 2020 Updated Ensembl gene tracks for 47 assemblies (v101)</h2> +<p> +We are pleased to announce an update to the +<a href="http://uswest.ensembl.org/info/genome/genebuild/index.html" target="_blank"> +Ensembl gene annotation</a> tracks to <strong>v101</strong> for the +following assemblies:</p><br> +<div class="container"> + <div class="row"> + <div class="col-sm-4"> + <ul> + <li>Armadillo <a href="../cgi-bin/hgTrackUi?db=dasNov3&g=ensGene" + target=_blank>(dasNov3)</a></li> + <li>Baboon <a href="../cgi-bin/hgTrackUi?db=papAnu4&g=ensGene" + target=_blank>(papAnu4)</a></li> + <li>Bison <a href="../cgi-bin/hgTrackUi?db=bisBis1&g=ensGene" + target=_blank>(bisBis1)</a></li> + <li>Bonobo <a href="../cgi-bin/hgTrackUi?db=panPan2&g=ensGene" + target=_blank>(panPan2)</a></li> + <li>Budgerigar <a href="../cgi-bin/hgTrackUi?db=melUnd1&g=ensGene" + target=_blank>(melUnd1)</a></li> + <li>Bushbaby <a href="../cgi-bin/hgTrackUi?db=otoGar3&g=ensGene" + target=_blank>(otoGar3)</a></li> + <li>C. elegans <a href="../cgi-bin/hgTrackUi?db=ce11&g=ensGene" + target=_blank>(ce11)</a></li> + <li>C. intestinalis <a href="../cgi-bin/hgTrackUi?db=ci3&g=ensGene" + target=_blank>(ci3)</a></li> + <li>Cat <a href="../cgi-bin/hgTrackUi?db=felCat9&g=ensGene" + target=_blank>(felCat9)</a></li> + <li>Chicken <a href="../cgi-bin/hgTrackUi?db=galGal6&g=ensGene" + target=_blank>(galGal6)</a></li> + <li>Chimp <a href="../cgi-bin/hgTrackUi?db=panTro5&g=ensGene" + target=_blank>(panTro5)</a></li> + <li>Chinese hamster <a href="../cgi-bin/hgTrackUi?db=criGriChoV1&g=ensGene" + target=_blank>(criGriChoV1)</a></li> + <li>Chinese hamster <a href="../cgi-bin/hgTrackUi?db=criGriChoV2&g=ensGene" + target=_blank>(criGriChoV2)</a></li> + <li>Coelacanth <a href="../cgi-bin/hgTrackUi?db=latCha1&g=ensGene" + target=_blank>(latCha1)</a></li> + <li>Cow <a href="../cgi-bin/hgTrackUi?db=bosTau9&g=ensGene" + target=_blank>(bosTau9)</a></li> + <li>Crab-eating macaque <a href="../cgi-bin/hgTrackUi?db=macFas5&g=ensGene" + target=_blank>(macFas5)</a></li> + </ul></div> + <div class="col-sm-4"> + <ul> + <li>D. melanogaster <a href="../cgi-bin/hgTrackUi?db=dm6&g=ensGene" + target=_blank>(dm6)</a></li> + <li>Dog <a href="../cgi-bin/hgTrackUi?db=canFam3&g=ensGene" + target=_blank>(canFam3)</a></li> + <li>Elephant <a href="../cgi-bin/hgTrackUi?db=loxAfr3&g=ensGene" + target=_blank>(loxAfr3)</a></li> + <li>Elephant shark <a href="../cgi-bin/hgTrackUi?db=calMil1&g=ensGene" + target=_blank>(calMil1)</a></li> + <li>Ferret <a href="../cgi-bin/hgTrackUi?db=musFur1&g=ensGene" + target=_blank>(musFur1)</a></li> + <li>Gibbon <a href="../cgi-bin/hgTrackUi?db=nomLeu3&g=ensGene" + target=_blank>(nomLeu3)</a></li> + <li>Golden snub-nosed monkey <a href="../cgi-bin/hgTrackUi?db=rhiRox1&g=ensGene" + target=_blank>(rhiRox1)</a></li> + <li>Gorilla <a href="../cgi-bin/hgTrackUi?db=gorGor4&g=ensGene" + target=_blank>(gorGor4)</a></li> + <li>Green monkey <a href="../cgi-bin/hgTrackUi?db=chlSab2&g=ensGene" + target=_blank>(chlSab2)</a></li> + <li>Guinea pig <a href="../cgi-bin/hgTrackUi?db=cavPor3&g=ensGene" + target=_blank>(cavPor3)</a></li> + <li>Horse <a href="../cgi-bin/hgTrackUi?db=equCab3&g=ensGene" + target=_blank>(equCab3)</a></li> + <li>Lamprey <a href="../cgi-bin/hgTrackUi?db=petMar2&g=ensGene" + target=_blank>(petMar2)</a></li> + <li>Lizard <a href="../cgi-bin/hgTrackUi?db=anoCar2&g=ensGene" + target=_blank>(anoCar2)</a></li> + <li>Medium ground finch <a href="../cgi-bin/hgTrackUi?db=geoFor1&g=ensGene" + target=_blank>(geoFor1)</a></li> + <li>Microbat <a href="../cgi-bin/hgTrackUi?db=myoLuc2&g=ensGene" + target=_blank>(myoLuc2)</a></li> + <li>Naked mole-rat <a href="../cgi-bin/hgTrackUi?db=hetGla1&g=ensGene" + target=_blank>(hetGla1)</a></li> + </ul></div> + <div class="col-sm-4"> + <ul> + <li>Naked mole-rat <a href="../cgi-bin/hgTrackUi?db=hetGla2&g=ensGene" + target=_blank>(hetGla2)</a></li> + <li>Orangutan <a href="../cgi-bin/hgTrackUi?db=ponAbe2&g=ensGene" + target=_blank>(ponAbe2)</a></li> + <li>Panda <a href="../cgi-bin/hgTrackUi?db=ailMel1&g=ensGene" + target=_blank>(ailMel1)</a></li> + <li>Pig <a href="../cgi-bin/hgTrackUi?db=susScr11&g=ensGene" + target=_blank>(susScr11)</a></li> + <li>Rabbit <a href="../cgi-bin/hgTrackUi?db=oryCun2&g=ensGene" + target=_blank>(oryCun2)</a></li> + <li>Rhesus <a href="../cgi-bin/hgTrackUi?db=rheMac10&g=ensGene" + target=_blank>(rheMac10)</a></li> + <li>S. cerevisiae <a href="../cgi-bin/hgTrackUi?db=sacCer3&g=ensGene" + target=_blank>(sacCer3)</a></li> + <li>Sheep <a href="../cgi-bin/hgTrackUi?db=oviAri3&g=ensGene" + target=_blank>(oviAri3)</a></li> + <li>Squirrel <a href="../cgi-bin/hgTrackUi?db=speTri2&g=ensGene" + target=_blank>(speTri2)</a></li> + <li>Squirrel monkey <a href="../cgi-bin/hgTrackUi?db=saiBol1&g=ensGene" + target=_blank>(saiBol1)</a></li> + <li>Tarsier <a href="../cgi-bin/hgTrackUi?db=tarSyr2&g=ensGene" + target=_blank>(tarSyr2)</a></li> + <li>Tasmanian devil <a href="../cgi-bin/hgTrackUi?db=sarHar1&g=ensGene" + target=_blank>(sarHar1)</a></li> + <li>Tetraodon <a href="../cgi-bin/hgTrackUi?db=tetNig2&g=ensGene" + target=_blank>(tetNig2)</a></li> + <li>Turkey <a href="../cgi-bin/hgTrackUi?db=melGal1&g=ensGene" + target=_blank>(melGal1)</a></li> + <li>X. tropicalis <a href="../cgi-bin/hgTrackUi?db=xenTro9&g=ensGene" + target=_blank>(xenTro9)</a></li> + </ul></div> +</div></div> +<p> +Thanks to Ensembl for providing these annotations, as well as +Hiram Clawson and Lou Nassar of the UCSC Genome Browser group for their +work in creating and releasing these tracks.</p> + <a name="101320"></a> <h2>Oct 13. 2020 Updated clinical tracks and features: LOVD, Decipher, and GeneReviews</h2> <p> We have updated three clinical tracks to add three ease-of-use features. Decipher and LOVD Copy Number Variant (CNV) tracks now have the option to "Merge items that span the current region", collapsing items that are annotated across the entire Genome Browser visible region. Decipher now includes options to filter by Pathogenicity and Variant Class. GeneReviews now has a simple mouse-over which shows gene symbol and disease associations.<p> <ul> <li><a href="/cgi-bin/hgTrackUi?db=hg38&g=lovdComp">LOVD</a> (<a href="/cgi-bin/hgTrackUi?db=hg38&g=lovdComp">hg38</a>/ <a href="/cgi-bin/hgTrackUi?db=hg19&g=lovdComp">hg19</a>)</li> <li><a href="/cgi-bin/hgTrackUi?db=hg19&g=decipher">Decipher</a>