a92af473a83fd7ad2e01a581bfa859f1ded38462
jnavarr5
  Fri Nov 13 16:56:13 2020 -0800
Adding visibility modes to the Genome in a Bottle views. Removing the 'visibility dense' lines since they are no longer needed in the children stanzas. refs #25873 and #24349

diff --git src/hg/makeDb/trackDb/human/trackDb.giab.ra src/hg/makeDb/trackDb/human/trackDb.giab.ra
index 4b7fc1d..14f7c2d 100644
--- src/hg/makeDb/trackDb/human/trackDb.giab.ra
+++ src/hg/makeDb/trackDb/human/trackDb.giab.ra
@@ -2,67 +2,67 @@
 shortLabel Genome In a Bottle
 longLabel Genome In a Bottle Structural Variants and Trios
 compositeTrack on
 visibility hide
 subGroup1 view Views trios=trios sv=Structural_Variants
 type bed 3
 group varRep
 html giab
 
     track svView
     shortLabel Genome In a Bottle Structural Variants
     longLabel Genome in a Bottle Structural Variants (dbVar nstd175)
     view sv
     type bigBed 9 +
     parent giab
+    visibility pack
 
         track giabSv
         parent svView
         shortLabel Genome In a Bottle Structural Variants
         longLabel Genome in a Bottle Structural Variants (dbVar nstd175)
         type bigBed 9 +
         subGroups view=sv
         itemRgb on
         url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/#VariantDetails
         urlLabel dbVar Variant Details:
         urls dbVarUrl="$$"
         mouseOverField _mouseOver
         bigDataUrl /gbdb/$D/giab/structuralVariants/giabSv.bb
 
     track triosView
     shortLabel Genome In a Bottle Trios
     longLabel Genome in a Bottle Ashkenazim and Chinese Trios
     view trios
     type vcfPhasedTrio
     parent giab
+    visibility dense
 
         track ashkenazimTrio
         parent triosView
         shortLabel Ashkenazim Trio
         longLabel Genome In a Bottle Ashkenazim Trio
         type vcfPhasedTrio
         subGroups view=trios
         bigDataUrl /gbdb/$D/giab/AshkenazimTrio/merged.vcf.gz
         maxWindowToDraw 5000000
         vcfUseAltSampleNames on
         vcfDoFilter off
         vcfDoQual off
         vcfDoMaf off
         vcfChildSample HG002|son
         vcfParentSamples HG003|father,HG004|mother
-        visibility dense
 
         track chineseTrio
         parent triosView
         shortLabel Chinese  Trio
         longLabel Genome In a Bottle Chinese  Trio
         type vcfPhasedTrio
         subGroups view=trios
         bigDataUrl /gbdb/$D/giab/ChineseTrio/merged.vcf.gz
         maxWindowToDraw 5000000
         vcfUseAltSampleNames on
         vcfDoFilter off
         vcfDoQual off
         vcfDoMaf off
         vcfChildSample HG005|son
         vcfParentSamples HG006|father,HG007|mother
-        visibility dense