3421b6247b80f8884055fd32df67c09a6f4e9ac5
markd
  Thu Nov 12 17:11:19 2020 -0800
import of gencode V35lift37

diff --git src/hg/makeDb/schema/all.joiner src/hg/makeDb/schema/all.joiner
index c8fd089..aa6bb63 100644
--- src/hg/makeDb/schema/all.joiner
+++ src/hg/makeDb/schema/all.joiner
@@ -3825,31 +3825,31 @@
 
 identifier wgEncodeGencodeCompAttrsV35lift37
 "Link together Gencode Comprehensive Table with Attributes table"
     hg19.wgEncodeGencodeAttrsV35lift37.transcriptId
     hg19.wgEncodeGencodeCompV35lift37.name
 
 identifier wgEncodeGencodePseudoGeneAttrsV35lift37
 "Link together Gencode PseudoGene Table with Attributes table"
     hg19.wgEncodeGencodeAttrsV35lift37.transcriptId
     hg19.wgEncodeGencodePseudoGeneV35lift37.name
 
 # gencode association tables (joined through wgEncodeGencodeAttrsV35lift37)
 identifier wgEncodeGencodeGeneSourceV35lift37
 "Link together Gencode Gene Source table with Attributes table"
     hg19.wgEncodeGencodeGeneSourceV35lift37.geneId
-    hg19.wgEncodeGencodeAttrsV35lift37.geneId
+    hg19.wgEncodeGencodeAttrsV35lift37.geneId minCheck=0.99
 
 identifier wgEncodeGencodeGeneSymbolV35lift37
 "Link together Gencode gene symbol table with Attributes table"
     hg19.wgEncodeGencodeGeneSymbolV35lift37.transcriptId dupeOk
     hg19.wgEncodeGencodeAttrsV35lift37.transcriptId minCheck=0.20
 
 identifier wgEncodeGencodePdbV35lift37
 "Link together Gencode Pdb table with Attributes table"
     hg19.wgEncodeGencodePdbV35lift37.transcriptId dupeOk
     hg19.wgEncodeGencodeAttrsV35lift37.transcriptId minCheck=0.015
 
 identifier wgEncodeGencodePubMedV35lift37
 "Link together Gencode Pubmed table with Attributes table"
     hg19.wgEncodeGencodePubMedV35lift37.transcriptId dupeOk
     hg19.wgEncodeGencodeAttrsV35lift37.transcriptId  minCheck=0.63
@@ -3861,31 +3861,31 @@
 
 identifier wgEncodeGencodeRefSeqToRefGeneV35lift37
 "Link together Gencode RefSeq table with refGene track"
     hg19.wgEncodeGencodeRefSeqV35lift37.rnaAcc dupeOk chopAfter=.
     hg19.refGene.name minCheck=0.77
 
 identifier wgEncodeGencodeTagV35lift37
 "Link together Gencode Tag table with Attributes table"
     hg19.wgEncodeGencodeTagV35lift37.transcriptId dupeOk
     hg19.wgEncodeGencodeAttrsV35lift37.transcriptId minCheck=0.36
     hg19.wgEncodeGencodeRefSeqV35lift37.transcriptId minCheck=0.9
 
 identifier wgEncodeGencodeTranscriptSourceV35lift37
 "Link together Gencode Transcript Source table with Attributes table"
     hg19.wgEncodeGencodeTranscriptSourceV35lift37.transcriptId
-    hg19.wgEncodeGencodeAttrsV35lift37.transcriptId
+    hg19.wgEncodeGencodeAttrsV35lift37.transcriptId minCheck=0.99
 
 identifier wgEncodeGencodeTranscriptSupportV35lift37
 "Link together Gencode Transcript Support table with Attributes table"
     hg19.wgEncodeGencodeTranscriptSupportV35lift37.transcriptId dupeOk
     hg19.wgEncodeGencodeAttrsV35lift37.transcriptId minCheck=0.20
 
 identifier wgEncodeGencodeTranscriptionSupportLevelV35lift37
 "Link together Gencode Transcription Support Level table with Attributes table"
     hg19.wgEncodeGencodeTranscriptionSupportLevelV35lift37.transcriptId dupeOk
     hg19.wgEncodeGencodeAttrsV35lift37.transcriptId minCheck=0.30
 
 identifier wgEncodeGencodeUniProtV35lift37
 "Link together Gencode UniProt Support table with Attributes table"
     hg19.wgEncodeGencodeUniProtV35lift37.transcriptId dupeOk
     hg19.wgEncodeGencodeAttrsV35lift37.transcriptId minCheck=0.35