File Changes for max

v407_preview2 to v407_base (2020-11-09 to 2020-11-16) v407

• src/hg/hgTracks/simpleTracks.c
  • lines changed 11, context: html, text, full: html, text
    2b9d8d6fe4ad7a276ec8294c6f615a5c2ed2ca79 Thu Nov 12 02:07:14 2020 -0800
    adding accession and strand to exon mouseover, refs #24395
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 8, context: html, text, full: html, text
    2b9d8d6fe4ad7a276ec8294c6f615a5c2ed2ca79 Thu Nov 12 02:07:14 2020 -0800
    adding accession and strand to exon mouseover, refs #24395
• src/hg/lib/hui.c
  • lines changed 3, context: html, text, full: html, text
    e355230ded4734b4640081ae2d0fd5247ceea25c Fri Nov 13 06:36:05 2020 -0800
    tiny change to data last updated text to make the difference between source database and UCSC data updates clearer, refs #23580
• src/hg/makeDb/doc/wuhCor1/pbm.txt
  • lines changed 8, context: html, text, full: html, text
    2b9d8d6fe4ad7a276ec8294c6f615a5c2ed2ca79 Thu Nov 12 02:07:14 2020 -0800
    adding accession and strand to exon mouseover, refs #24395
  • lines changed 1, context: html, text, full: html, text
    17d742023c599268d6b252879b3b939e163be539 Fri Nov 13 05:45:17 2020 -0800
    docs and makedoc page for the wuhCor1 pbm (beijing) track, refs #26518
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    d6773312dae58699ac4712a47bb779269702b418 Mon Nov 16 07:05:06 2020 -0800
    fixing genomenom outlinks after email from their QA, refs #24157
• src/hg/makeDb/trackDb/virus/wuhCor1/iedb.html
  • lines changed 3, context: html, text, full: html, text
    a17e844df57237d5f44b8e758c6398ae1f7bf672 Fri Nov 13 07:02:19 2020 -0800
    updating iedb docs page a little after email from DavidH
• src/hg/makeDb/trackDb/virus/wuhCor1/pbm.html
  • lines changed 50, context: html, text, full: html, text
    17d742023c599268d6b252879b3b939e163be539 Fri Nov 13 05:45:17 2020 -0800
    docs and makedoc page for the wuhCor1 pbm (beijing) track, refs #26518
• src/hg/makeDb/trackDb/virus/wuhCor1/pbm.ra
  • lines changed 12, context: html, text, full: html, text
    bb65599525224d7282e55ab293d7ffa4db83fecb Mon Nov 9 11:02:28 2020 -0800
    adding protein antibody array for wuhCor1, no redmine yet but coming
  • lines changed 1, context: html, text, full: html, text
    80ecb6e9bc4a0b6248b2c2ddfa6fff38c0985e6a Thu Nov 12 08:52:11 2020 -0800
    adding protein microarray (beijing) track for wuhCor1, refs #26518
• src/hg/makeDb/trackDb/virus/wuhCor1/pbmIggCovid.ra
  • lines changed 80, context: html, text, full: html, text
    bb65599525224d7282e55ab293d7ffa4db83fecb Mon Nov 9 11:02:28 2020 -0800
    adding protein antibody array for wuhCor1, no redmine yet but coming
• src/hg/makeDb/trackDb/virus/wuhCor1/pbmIggHealthy.ra
  • lines changed 94, context: html, text, full: html, text
    bb65599525224d7282e55ab293d7ffa4db83fecb Mon Nov 9 11:02:28 2020 -0800
    adding protein antibody array for wuhCor1, no redmine yet but coming
• src/hg/makeDb/trackDb/virus/wuhCor1/pbmIgmCovid.ra
  • lines changed 79, context: html, text, full: html, text
    bb65599525224d7282e55ab293d7ffa4db83fecb Mon Nov 9 11:02:28 2020 -0800
    adding protein antibody array for wuhCor1, no redmine yet but coming
  • lines changed 1, context: html, text, full: html, text
    80ecb6e9bc4a0b6248b2c2ddfa6fff38c0985e6a Thu Nov 12 08:52:11 2020 -0800
    adding protein microarray (beijing) track for wuhCor1, refs #26518
• src/hg/makeDb/trackDb/virus/wuhCor1/pbmIgmHealthy.ra
  • lines changed 93, context: html, text, full: html, text
    bb65599525224d7282e55ab293d7ffa4db83fecb Mon Nov 9 11:02:28 2020 -0800
    adding protein antibody array for wuhCor1, no redmine yet but coming
  • lines changed 1, context: html, text, full: html, text
    80ecb6e9bc4a0b6248b2c2ddfa6fff38c0985e6a Thu Nov 12 08:52:11 2020 -0800
    adding protein microarray (beijing) track for wuhCor1, refs #26518
• src/hg/makeDb/trackDb/virus/wuhCor1/pyle.html
  • lines changed 18, context: html, text, full: html, text
    159c15c4786bf1550ee8249ba9984018fc767e45 Thu Nov 12 08:21:57 2020 -0800
    making change to pyle data, refs #26466
• src/hg/makeDb/trackDb/virus/wuhCor1/pyle.ra
  • lines changed 22, context: html, text, full: html, text
    159c15c4786bf1550ee8249ba9984018fc767e45 Thu Nov 12 08:21:57 2020 -0800
    making change to pyle data, refs #26466
• src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.uniprot.ra
  • lines changed 1, context: html, text, full: html, text
    aeca0c31ca5a7ab6f8cbdf6def6ca9092dc98f93 Fri Nov 13 06:44:14 2020 -0800
    forgot to remove the April 2020 comment in uniprot proteins. Also now showing by default, but only in dense, the UniProt full length proteins, after I forgot myself two times now to activate this track. The S protein start position is not the one shown on our chains track, because the active S protein has cleaved from the pre-protein, which is easy to forget on the genome browser, if the full proteins are not shown. No redmine, as this is a one-word change in trackDb.
• src/hg/makeDb/trackDb/virus/wuhCor1/unipCov2AliSwissprot.html
  • lines changed 7, context: html, text, full: html, text
    aeca0c31ca5a7ab6f8cbdf6def6ca9092dc98f93 Fri Nov 13 06:44:14 2020 -0800
    forgot to remove the April 2020 comment in uniprot proteins. Also now showing by default, but only in dense, the UniProt full length proteins, after I forgot myself two times now to activate this track. The S protein start position is not the one shown on our chains track, because the active S protein has cleaved from the pre-protein, which is easy to forget on the genome browser, if the full proteins are not shown. No redmine, as this is a one-word change in trackDb.
• src/utils/chromToUcsc/chromToUcsc
  • lines changed 24, context: html, text, full: html, text
    a5b8dc9064dc31482e96b5a1f4e4ce6a2cd8523a Mon Nov 16 05:08:43 2020 -0800
    allowing wiggle files in chromToUcsc, no redmine, came up when trying to process a lemur single cell dataset
• src/utils/chromToUcsc/makefile
  • lines changed 1, context: html, text, full: html, text
    43dd678817261131b81c42a160112c05cdc49032 Mon Nov 16 05:17:42 2020 -0800
    tiny fix to chromToUcsc makefile: changing times is not permitted in /cluster/bin/x86_64/chromToUcsc, no redmine
  • lines changed 1, context: html, text, full: html, text
    4650a06fc393355729d0f8c5ed74d4b81dd814f9 Mon Nov 16 07:53:20 2020 -0800
    adding back the -p to makefile, after feedback from Braney, no redmine
• src/utils/chromToUcsc/tests/expected/hg19.bed
  • lines changed 7, context: html, text, full: html, text
    a5b8dc9064dc31482e96b5a1f4e4ce6a2cd8523a Mon Nov 16 05:08:43 2020 -0800
    allowing wiggle files in chromToUcsc, no redmine, came up when trying to process a lemur single cell dataset
• src/utils/chromToUcsc/tests/in/hg19.bed
  • lines changed 7, context: html, text, full: html, text
    a5b8dc9064dc31482e96b5a1f4e4ce6a2cd8523a Mon Nov 16 05:08:43 2020 -0800
    allowing wiggle files in chromToUcsc, no redmine, came up when trying to process a lemur single cell dataset