Commits for chmalee

v406_base to v407_preview (2020-10-26 to 2020-11-02) v407

bc6a803ab72e4c35c16af563b3e88c03ee1adb5c Mon Oct 26 12:10:29 2020 -0700

• Support bigBed extra fields substitutions in hgc URL link outs
  • src/hg/hgc/bigBedClick.c - lines changed 33, context: html, text, full: html, text
  • src/hg/hgc/hgc.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgc/hgc.h - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra - lines changed 5, context: html, text, full: html, text

1203d7c21e26bd5d57154cc5c0c42780b8b5ca1a Tue Oct 27 10:11:47 2020 -0700

• Fixing bug in mouseOver trackDb setting, if a field to be substituted is a prefix to another field to be substituted, allow user to wrap one/both fields in curly braces like shell in order to protect the substitution
  • src/hg/lib/hui.c - lines changed 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra - lines changed 1, context: html, text, full: html, text

3001eec709205e44c2ed2f1c6f42df510b8a5c37 Thu Oct 29 14:47:14 2020 -0700

• Fix off by one in gnomAD VCF to bed conversion, which resulted in a url link out error, so adding new substitution to trackDb url, refs #25010
  • src/hg/lib/hui.c - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/utils/vcfToBed/vcfToBed.c - lines changed 2, context: html, text, full: html, text

151ad186929ae59ee3f5986826715ad684c23460 Thu Oct 29 17:41:44 2020 -0700

• Fix up after code review, refs #26421
  • src/hg/utils/tdbQuery/tdbQuery.c - lines changed 3, context: html, text, full: html, text