c0d9758b9b42bacf94b50b5b196a1754b3c1e6ae dschmelt Wed Oct 28 14:41:57 2020 -0700 Fixing lollipop spelling No RM diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 219f4e3..d4a4c57 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -537,45 +537,45 @@ <h2>Sept. 25, 2020   New data and visualization types: Covid GWAS (Lollypop) and Family Trios (VCF Trios)</h2> <h3>Covid GWAS meta-analysis</h3> <p> We are happy to announce the first COVID-19 tracks in our human genome browsers <a href="../../cgi-bin/hgGateway?db=hg19">GRCh37/hg19</a> and <a href="../../cgi-bin/hgGateway?db=hg38">GRCh38/hg38</a>, the COVID-19 GWAS meta-analysis. This track brings together data from 17 international GWAS studies and aims to identify genetic determinants of SARS-CoV-2 infection susceptibility and disease severity. These data are from the <a href="https://www.covid19hg.org/results/" target="_blank"> COVID-19 Host Genetics Initiative (HGI)</a>, a collaborative effort to analyze and share viral host genetics research. More resources are available on our page: <a href="../../covid19.html">COVID-19 Resources at UCSC</a>. </p> <p> -These data are shown in our new lollypop visualization in order to show the dimensions of +These data are shown in our new lollipop visualization in order to show the dimensions of effect size and p-value in addition to location. Filters are also available for these variables and the number of studies. Custom tracks using the -lollypop format are not yet available. For more information on these +lollipop format are not yet available. For more information on these datasets, please read the track description page and try the interactive visualization for yourself:</p> <ul> <li><a href="../../cgi-bin/hgTrackUi?db=hg19&g=covidHgiGwas">COVID-19 GWAS on GRCh37/hg19</a></li> <li><a href="../../cgi-bin/hgTrackUi?db=hg38&g=covidHgiGwas">COVID-19 GWAS on GRCh38/hg38</a></li> </ul> <div class="text-center"> <a href="../../cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=dschmelt&hgS_otherUserSessionName=covidGwas"> <img width="80%" height="80%" -src="../../images/CovidGWAS.png" alt="The COVID-19 GWAS track shows variants as lollypops, +src="../../images/CovidGWAS.png" alt="The COVID-19 GWAS track shows variants as lollipops, with the colored head showing the p-value and the height of the stick showing effect size."></a> </div> <p>Our gratitude goes to the COVID-19 Host Genetics Initiative contributors and project leads for making this data available, Kumar Veerapen, Rachel Liao, and Juha Karjalainen at the Broad Institute for their input during track development. We would also like to thank the UCSC Genome Browser staff Kate Rosenbloom, Daniel Schmelter, Brain Raney, and Ana Benet-Pages for developing, staging, and documenting this track.</p> <h3>1000 Genomes Family Trios (Phased VCFs)</h3> <p> We are happy to share a new data set, 1000 Genomes Trios on hg38, and a visualization tool for displaying chromosome phased VCFs and family inheritance patterns. This track shows phased