33c5e452f2df131473468f0206a360a16ba9dcd3
hiram
  Tue Oct 27 13:15:17 2020 -0700
update per alert from Terence for new versions although hg19 needs to wait for the new files refs #26428

diff --git src/hg/makeDb/doc/mm39/initialBuild.txt src/hg/makeDb/doc/mm39/initialBuild.txt
index 2e80032..03ac9d4 100644
--- src/hg/makeDb/doc/mm39/initialBuild.txt
+++ src/hg/makeDb/doc/mm39/initialBuild.txt
@@ -1328,16 +1328,31 @@
     wc -l redmine.mm39.table.list
     # 45 redmine.mm39.table.list
 
     awk -F'.' '{printf "hgsql -N %s -e '"'"'show table status like \"%s\";'"'"'\n", $1, $2}' redmine.mm39.table.list | sh | wc -l
     # 45
 
     # would be a smaller number actual if some were missing
 
     # add the path names to the listing files in the redmine issue
     # in the three appropriate entry boxes:
 
 #	/hive/data/genomes/mm39/pushQ/redmine.mm39.file.list
 #	/hive/data/genomes/mm39/pushQ/redmine.mm39.releaseLog.txt
 #	/hive/data/genomes/mm39/pushQ/redmine.mm39.table.list
 
-#########################################################################
+#############################################################################
+# update 2020-10-27 (DONE - Hiram - 2020-10-27)
+
+  mkdir /hive/data/genomes/mm39/bed/ncbiRefSeq.2020-10-27
+  cd /hive/data/genomes/mm39/bed/ncbiRefSeq.2020-10-27
+
+  time (~/kent/src/hg/utils/automation/doNcbiRefSeq.pl -buildDir=`pwd` \
+      -bigClusterHub=ku -dbHost=hgwdev \
+      -fileServer=hgwdev -smallClusterHub=hgwdev -workhorse=hgwdev \
+      GCF_000001635.27_GRCm39 mm39) > do.log 2>&1 &
+  # real    10m2.220s
+
+  cat fb.ncbiRefSeq.mm39.txt
+  # 128640844 bases of 2654624157 (4.846%) in intersection
+
+#############################################################################