aa40ce7e05f8258122f9ce48f6eb08c8dff942fb dschmelt Tue Nov 3 16:20:53 2020 -0800 Updating default track and switching priority to show gtex v8 refs #25130 diff --git src/hg/makeDb/trackDb/human/trackDb.gtex.ra src/hg/makeDb/trackDb/human/trackDb.gtex.ra index b509078..dfcba5f 100644 --- src/hg/makeDb/trackDb/human/trackDb.gtex.ra +++ src/hg/makeDb/trackDb/human/trackDb.gtex.ra @@ -1,33 +1,33 @@ # GTEx (Genotype Tissue Expression) project tracks # Allele-specific expression include trackDb.gtexAwgAse.ra # Gene expression track gtexGene shortLabel GTEx Gene longLabel Gene Expression in 53 tissues from GTEx RNA-seq of 8555 samples (570 donors) type bed 6 + html gtexGeneExpr group expression -priority 1 +priority 10.1 maxItems 200 spectrum on -visibility pack +visibility hide searchTable gtexGene query select chrom, chromStart, chromEnd, geneId from %s where geneId like '%s%%' termRegex gtex:ENSG[0-9]+(\.[0-9]+)? termPrefix gtex: shortCircuit 1 track gtexTranscExpr shortLabel GTEx Transcript longLabel Transcript Expression in 53 tissues from GTEx RNA-seq of 8555 samples/570 donors type bigBarChart barChartLabel Tissue types barChartUnit TPM # Get the barChartLabels from the last line in the bed file. barChartBars \ @@ -68,31 +68,32 @@ release alpha type bed 6 + shortLabel GTEx Expr V4 longLabel Gene Expression in 53 tissues from GTEx RNA-seq of 2921 samples, 209 donors (V4, Aug 2014) html gtexGeneExprV4 group expression priority 10.1 track gtexGeneV8 shortLabel GTEx Gene V8 longLabel Gene Expression in 54 tissues from GTEx RNA-seq of 17382 samples, 948 donors (V8, Aug 2019) type bed 6 + group expression maxItems 200 spectrum on -priority 10.1 +priority 1 +visibility pack track gtexSnp release alpha type bed 4 shortLabel GTEx Variant longLabel Genetic variants imputed from genotyping of GTEx samples (209 donors) group expression html getxEqtlSnp priority 10.15 track gtexEqtlSnp release alpha type bed 4 shortLabel GTEx Pilot eQTL longLabel Genetic variants identified by GTEx V4 (pilot) analysis as significantly affecting gene expression