199af1bfc7e950026d4392777113e6bf6d8d61f9 max Mon Nov 9 03:27:48 2020 -0800 libifying refseq summary abbreviator and also running on the refGene hgc page. refs #26454 diff --git src/hg/inc/hdb.h src/hg/inc/hdb.h index d6eaa09..defca50 100644 --- src/hg/inc/hdb.h +++ src/hg/inc/hdb.h @@ -1041,24 +1041,28 @@ char *hFindLatestSnpTableConn(struct sqlConnection *conn, char *suffix); /* Return the name of the 'snp1__' table with the highest build number, if any. * suffix may be NULL to get the 'All SNPs' table (as opposed to Common, Flagged, Mult). */ char *hFindLatestGencodeTableConn(struct sqlConnection *conn, char *suffix); /* Return the 'wgEncodeGencodeV' table with the highest version number, if any. * If suffix is NULL, it defaults to Basic. */ boolean hDbHasNcbiRefSeq(char *db); /* Return TRUE if db has NCBI's RefSeq alignments and annotations. */ char *hRefSeqAccForChrom(char *db, char *chrom); /* Return the RefSeq NC_000... accession for chrom if we can find it, else just chrom. * db must never change. */ +char *abbreviateRefSeqSummary(char *summary); +/* strip off the uninformative parts from the RefSeq Summary text: the repetitive note + * about the publication subset and the Evidence-Data-Notes */ + boolean isMito(char *chrom); /* Return True if chrom is chrM or chrMT */ char *hdbDefaultKnownDb(char *db); /* Get the default knownGene database from the defaultKnown table. */ char *hdbGetMasterGeneTrack(char *knownDb); /* Get the native gene track for a knownGene database. */ #endif /* HDB_H */