ce76a7bd0cd856b6cc1aa35360849af7fe224c45
angie
  Tue Dec 1 10:14:32 2020 -0800
Another link & wording tweak suggested by David.  Also update Nextstrain drag-and-drop link to new location.

diff --git src/hg/hgPhyloPlace/hgPhyloPlace.c src/hg/hgPhyloPlace/hgPhyloPlace.c
index 27946a9..f3fb03e 100644
--- src/hg/hgPhyloPlace/hgPhyloPlace.c
+++ src/hg/hgPhyloPlace/hgPhyloPlace.c
@@ -167,47 +167,47 @@
 puts("<p>Upload your SARS-CoV-2 sequence (FASTA or VCF file) to find the most similar\n"
      "complete, high-coverage samples from \n"
      "<a href='https://www.gisaid.org/' target='_blank'>GISAID</a>\n"
      "and your sequence's placement in the phylogenetic tree generated by the\n"
      "<a href='https://github.com/roblanf/sarscov2phylo' target='_blank'>sarscov2phylo</a>\n"
      "pipeline.\n"
      "Placement is performed by\n"
      "<a href='https://github.com/yatisht/usher' target=_blank>"
      "Ultrafast Sample placement on Existing tRee (UShER)</a> "
      "(<a href='https://www.biorxiv.org/content/10.1101/2020.09.26.314971v1' target=_blank>"
      "Turakhia <em>et al.</em></a>).  UShER also generates local subtrees to show samples "
      "in the context of the most closely related sequences.  The subtrees can be visualized "
      "as Genome Browser custom tracks and/or using "
      "<a href='https://nextstrain.org' target=_blank>Nextstrain</a>'s interactive display "
      "which supports "
-     "<a href='https://docs.nextstrain.org/projects/auspice/en/latest/advanced-functionality/drag-drop-csv-tsv.html' "
+     "<a href='"NEXTSTRAIN_DRAG_DROP_DOC"' "
      "target=_blank>drag-and-drop</a> of local metadata that remains on your computer.</p>\n");
 puts("<p><b>Note:</b> "
      "Please do not upload any files that contain "
      "<a href='https://en.wikipedia.org/wiki/Protected_health_information#United_States' "
      "target=_blank>Protected Health Information (PHI)</a> "
      "to UCSC.</p>\n"
      "<p>We do not store your information "
      "(aside from the information necessary to display results)\n"
      "and will not share it with others unless you choose to share your Genome Browser view.</p>\n"
      "<p>In order to enable rapid progress in SARS-CoV-2 research and genomic contact tracing,\n"
      "please share your SARS-CoV-2 sequences by submitting them to an "
      "<a href='https://ncbiinsights.ncbi.nlm.nih.gov/2020/08/17/insdc-covid-data-sharing/' "
      "target=_blank>INSDC</a> member institution\n"
-     "(<a href='https://submit.ncbi.nlm.nih.gov/sarscov2/' target=_blank>NCBI</a> in the U.S.,\n"
-     "<a href='https://www.covid19dataportal.org/submit-data' target=_blank>EMBL-EBI</a> in Europe\n"
-     "and <a href='https://www.ddbj.nig.ac.jp/ddbj/websub.html' target=_blank>DDBJ</a> in Japan)\n"
+     "(<a href='https://submit.ncbi.nlm.nih.gov/sarscov2/' target=_blank>NCBI</a>,\n"
+     "<a href='https://www.covid19dataportal.org/submit-data' target=_blank>EMBL-EBI</a>\n"
+     "or <a href='https://www.ddbj.nig.ac.jp/ddbj/websub.html' target=_blank>DDBJ</a>)\n"
      "and <a href='https://www.gisaid.org/' target=_blank>GISAID</a>.\n"
      "</p>\n");
 puts("</div>");
 puts("  </div>");
 puts("  <div class='gbControl col-md-12'>");
 printf("<input type='file' id='%s' name='%s' "
        "accept='.fa, .fasta, .vcf, .vcf.gz, .fa.gz, .fasta.gz'>",
        seqFileVar, seqFileVar);
 printf("Number of samples per subtree showing sample placement: ");
 int subtreeSize = cartUsualInt(cart, "subtreeSize", 50);
 cgiMakeIntVarWithLimits("subtreeSize", subtreeSize,
  "Number of samples in subtree showing neighborhood of placement",
  5, 10, 1000);
 cgiMakeOnClickSubmitButton(CHECK_FILE_INPUT_JS, "submit", "upload");
 puts("  </div>");