ce76a7bd0cd856b6cc1aa35360849af7fe224c45 angie Tue Dec 1 10:14:32 2020 -0800 Another link & wording tweak suggested by David. Also update Nextstrain drag-and-drop link to new location. diff --git src/hg/hgPhyloPlace/treeToAuspiceJson.c src/hg/hgPhyloPlace/treeToAuspiceJson.c index 9fb559d..34489b5 100644 --- src/hg/hgPhyloPlace/treeToAuspiceJson.c +++ src/hg/hgPhyloPlace/treeToAuspiceJson.c @@ -41,32 +41,31 @@ " \"title\": \"Sample type\", \"type\": \"categorical\" }" " ] , " //#*** Filters didn't seem to work... maybe something about the new fetch feature, or do I need to spcify in some other way? //#*** "\"filters\": [ \"GISAID_clade\", \"region\", \"country\", \"division\", \"author\" ], " "\"display_defaults\": { " " \"branch_label\": \"nuc mutations\" " "}, " , outF); fprintf(outF, "\"description\": \"Dataset generated by [UShER web interface]" "(%shgPhyloPlace) using the " "[usher](https://github.com/yatisht/usher/) program. " //#*** TODO: describe input from which tree was generated: user sample, version of tree, etc. , hLocalHostCgiBinUrl()); fputs("If you have metadata you wish to display, you can now drag on a CSV file and it will be " - "added into this view, [see here]" - "(https://nextstrain.github.io/auspice/advanced-functionality/drag-drop-csv-tsv) " + "added into this view, [see here]("NEXTSTRAIN_DRAG_DROP_DOC") " "for more info.\"} ," , outF); } struct sampleMetadata /* Information about a virus sample. */ { char *strain; // Strain name, usually of the form Country/ArbitraryId/YYYY-MM-DD char *epiId; // GISAID EPI_ISL_[0-9]+ ID char *date; // Sample collection date char *author; // Author(s) to credit char *gClade; // GISAID clade char *lineage; // Pangolin lineage char *country; // Country in which sample was collected char *division; // Administrative division in which sample was collected (country or state)