8a2514bdfd594490e0a459fa72364af995a56ddb hiram Sat Dec 5 23:07:19 2020 -0800 no longer need the warning about excessive time with the keyList option refs #23891 diff --git src/utils/twoBitDup/twoBitDup.c src/utils/twoBitDup/twoBitDup.c index dca16dd..30624f1 100644 --- src/utils/twoBitDup/twoBitDup.c +++ src/utils/twoBitDup/twoBitDup.c @@ -11,33 +11,30 @@ #include "math.h" #include "udc.h" #include <openssl/md5.h> // static char const rcsid[] = "$Id: newProg.c,v 1.30 2010/03/24 21:18:33 hiram Exp $"; void usage() /* Explain usage and exit. */ { errAbort( "twoBitDup - check to see if a twobit file has any identical sequences in it\n" "usage:\n" " twoBitDup file.2bit\n" "options:\n" " -keyList=file - file to write a key list, two columns: md5sum and sequenceName\n" - " NOTE: use of keyList is very time expensive for 2bit files\n" - " with a large number of sequences (> 5,000). Better to\n" - " use a cluster run with the doIdKeys.pl automation script.\n" " -udcDir=/dir/to/cache - place to put cache for remote bigBed/bigWigs\n" "\nexample: twoBitDup -keyList=stdout db.2bit \\\n" " | grep -v 'are identical' | sort > db.idKeys.txt" ); } static char *keyList = NULL; static struct optionSpec options[] = { {"keyList", OPTION_STRING}, {"udcDir", OPTION_STRING}, {NULL, 0}, }; void twoBitDup(char *filename)