9fa743ca51710376f192e7689e768a77f94d9dda lrnassar Mon Nov 30 14:26:57 2020 -0800 News announcement for new uniprot tracks refs #25784 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index e3e3608..b3b7b16 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -39,30 +39,288 @@ </div> <div class="col-sm-3"> <ul> <li><a href="#2005">2005 News</a></li> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2020 archived news ============= --> <a name="2020"></a> + +<a name="120220"></a> +<h2>Dec. 2, 2020 New and updated UniProt tracks for 117 assemblies</h2> +<p> +We are pleased to announce new and updated +<a href="https://www.uniprot.org/" target="_blank"</a>UniProt tracks</a> for the +following assemblies:</p><br> +<div class="container"> + <div class="row"> + <div class="col-sm-4"> + <ul> + <li>A. gambiae <a href="../cgi-bin/hgTrackUi?db=anoGam1&g=uniprot" + target=_blank>(anoGam1)</a></li> + <li>A. gambiae <a href="../cgi-bin/hgTrackUi?db=anoGam3&g=uniprot" + target=_blank>(anoGam3)</a></li> + <li>A. mellifera <a href="../cgi-bin/hgTrackUi?db=apiMel2&g=uniprot" + target=_blank>(apiMel2)</a></li> + <li>African clawed frog <a href="../cgi-bin/hgTrackUi?db=xenLae2&g=uniprot" + target=_blank>(xenLae2)</a></li> + <li>Alpaca <a href="../cgi-bin/hgTrackUi?db=vicPac2&g=uniprot" + target=_blank>(vicPac2)</a></li> + <li>American alligator <a href="../cgi-bin/hgTrackUi?db=allMis1&g=uniprot" + target=_blank>(allMis1)</a></li> + <li>Armadillo <a href="../cgi-bin/hgTrackUi?db=dasNov3&g=uniprot" + target=_blank>(dasNov3)</a></li> + <li>Atlantic cod <a href="../cgi-bin/hgTrackUi?db=gadMor1&g=uniprot" + target=_blank>(gadMor1)</a></li> + <li>Baboon <a href="../cgi-bin/hgTrackUi?db=papAnu4&g=uniprot" + target=_blank>(papAnu4)</a></li> + <li>Baboon <a href="../cgi-bin/hgTrackUi?db=papHam1&g=uniprot" + target=_blank>(papHam1)</a></li> + <li>Bison <a href="../cgi-bin/hgTrackUi?db=bisBis1&g=uniprot" + target=_blank>(bisBis1)</a></li> + <li>Bonobo <a href="../cgi-bin/hgTrackUi?db=panPan3&g=uniprot" + target=_blank>(panPan3)</a></li> + <li>Brown kiwi <a href="../cgi-bin/hgTrackUi?db=aptMan1&g=uniprot" + target=_blank>(aptMan1)</a></li> + <li>Budgerigar <a href="../cgi-bin/hgTrackUi?db=melUnd1&g=uniprot" + target=_blank>(melUnd1)</a></li> + <li>Bushbaby <a href="../cgi-bin/hgTrackUi?db=otoGar3&g=uniprot" + target=_blank>(otoGar3)</a></li> + <li>C. brenneri <a href="../cgi-bin/hgTrackUi?db=caePb2&g=uniprot" + target=_blank>(caePb2)</a></li> + <li>C. briggsae <a href="../cgi-bin/hgTrackUi?db=cb3&g=uniprot" + target=_blank>(cb3)</a></li> + <li>C. elegans <a href="../cgi-bin/hgTrackUi?db=ce10&g=uniprot" + target=_blank>(ce10)</a></li> + <li>C. elegans <a href="../cgi-bin/hgTrackUi?db=ce11&g=uniprot" + target=_blank>(ce11)</a></li> + <li>C. elegans <a href="../cgi-bin/hgTrackUi?db=ce6&g=uniprot" + target=_blank>(ce6)</a></li> + <li>C. intestinalis <a href="../cgi-bin/hgTrackUi?db=ci3&g=uniprot" + target=_blank>(ci3)</a></li> + <li>C. japonica <a href="../cgi-bin/hgTrackUi?db=caeJap1&g=uniprot" + target=_blank>(caeJap1)</a></li> + <li>C. remanei <a href="../cgi-bin/hgTrackUi?db=caeRem3&g=uniprot" + target=_blank>(caeRem3)</a></li> + <li>Cat <a href="../cgi-bin/hgTrackUi?db=felCat9&g=uniprot" + target=_blank>(felCat9)</a></li> + <li>Chicken <a href="../cgi-bin/hgTrackUi?db=galGal6&g=uniprot" + target=_blank>(galGal6)</a></li> + <li>Chimp <a href="../cgi-bin/hgTrackUi?db=panTro6&g=uniprot" + target=_blank>(panTro6)</a></li> + <li>Chinese hamster <a href="../cgi-bin/hgTrackUi?db=criGriChoV2&g=uniprot" + target=_blank>(criGriChoV2)</a></li> + <li>Chinese pangolin <a href="../cgi-bin/hgTrackUi?db=manPen1&g=uniprot" + target=_blank>(manPen1)</a></li> + <li>Coelacanth <a href="../cgi-bin/hgTrackUi?db=latCha1&g=uniprot" + target=_blank>(latCha1)</a></li> + <li>Cow <a href="../cgi-bin/hgTrackUi?db=bosTau8&g=uniprot" + target=_blank>(bosTau8)</a></li> + <li>Cow <a href="../cgi-bin/hgTrackUi?db=bosTau9&g=uniprot" + target=_blank>(bosTau9)</a></li> + <li>Crab-eating macaque <a href="../cgi-bin/hgTrackUi?db=macFas5&g=uniprot" + target=_blank>(macFas5)</a></li> + <li>D. ananassae <a href="../cgi-bin/hgTrackUi?db=droAna2&g=uniprot" + target=_blank>(droAna2)</a></li> + <li>D. erecta <a href="../cgi-bin/hgTrackUi?db=droEre1&g=uniprot" + target=_blank>(droEre1)</a></li> + <li>D. grimshawi <a href="../cgi-bin/hgTrackUi?db=droGri1&g=uniprot" + target=_blank>(droGri1)</a></li> + <li>D. melanogaster <a href="../cgi-bin/hgTrackUi?db=dm6&g=uniprot" + target=_blank>(dm6)</a></li> + <li>D. mojavensis <a href="../cgi-bin/hgTrackUi?db=droMoj2&g=uniprot" + target=_blank>(droMoj2)</a></li> + <li>D. persimilis <a href="../cgi-bin/hgTrackUi?db=droPer1&g=uniprot" + target=_blank>(droPer1)</a></li> + <li>D. pseudoobscura <a href="../cgi-bin/hgTrackUi?db=dp3&g=uniprot" + target=_blank>(dp3)</a></li> + </ul></div> + <div class="col-sm-4"> + <ul> + <li>D. sechellia <a href="../cgi-bin/hgTrackUi?db=droSec1&g=uniprot" + target=_blank>(droSec1)</a></li> + <li>D. simulans <a href="../cgi-bin/hgTrackUi?db=droSim1&g=uniprot" + target=_blank>(droSim1)</a></li> + <li>D. virilis <a href="../cgi-bin/hgTrackUi?db=droVir2&g=uniprot" + target=_blank>(droVir2)</a></li> + <li>D. yakuba <a href="../cgi-bin/hgTrackUi?db=droYak2&g=uniprot" + target=_blank>(droYak2)</a></li> + <li>Dog <a href="../cgi-bin/hgTrackUi?db=canFam4&g=uniprot" + target=_blank>(canFam4)</a></li> + <li>Dolphin <a href="../cgi-bin/hgTrackUi?db=turTru2&g=uniprot" + target=_blank>(turTru2)</a></li> + <li>Ebola virus <a href="../cgi-bin/hgTrackUi?db=eboVir3&g=uniprot" + target=_blank>(eboVir3)</a></li> + <li>Elephant <a href="../cgi-bin/hgTrackUi?db=loxAfr3&g=uniprot" + target=_blank>(loxAfr3)</a></li> + <li>Elephant shark <a href="../cgi-bin/hgTrackUi?db=calMil1&g=uniprot" + target=_blank>(calMil1)</a></li> + <li>Ferret <a href="../cgi-bin/hgTrackUi?db=musFur1&g=uniprot" + target=_blank>(musFur1)</a></li> + <li>Fugu <a href="../cgi-bin/hgTrackUi?db=fr3&g=uniprot" + target=_blank>(fr3)</a></li> + <li>Garter snake <a href="../cgi-bin/hgTrackUi?db=thaSir1&g=uniprot" + target=_blank>(thaSir1)</a></li> + <li>Gibbon <a href="../cgi-bin/hgTrackUi?db=nomLeu3&g=uniprot" + target=_blank>(nomLeu3)</a></li> + <li>Golden eagle <a href="../cgi-bin/hgTrackUi?db=aquChr2&g=uniprot" + target=_blank>(aquChr2)</a></li> + <li>Golden snub-nosed monkey <a href="../cgi-bin/hgTrackUi?db=rhiRox1&g=uniprot" + target=_blank>(rhiRox1)</a></li> + <li>Gorilla <a href="../cgi-bin/hgTrackUi?db=gorGor6&g=uniprot" + target=_blank>(gorGor6)</a></li> + <li>Green monkey <a href="../cgi-bin/hgTrackUi?db=chlSab2&g=uniprot" + target=_blank>(chlSab2)</a></li> + <li>Guinea pig <a href="../cgi-bin/hgTrackUi?db=cavPor3&g=uniprot" + target=_blank>(cavPor3)</a></li> + <li>Hedgehog <a href="../cgi-bin/hgTrackUi?db=eriEur2&g=uniprot" + target=_blank>(eriEur2)</a></li> + <li>Horse <a href="../cgi-bin/hgTrackUi?db=equCab3&g=uniprot" + target=_blank>(equCab3)</a></li> + <li>Human <a href="../cgi-bin/hgTrackUi?db=hg19&g=uniprot" + target=_blank>(hg19)</a></li> + <li>Human <a href="../cgi-bin/hgTrackUi?db=hg38&g=uniprot" + target=_blank>(hg38)</a></li> + <li>Kangaroo rat <a href="../cgi-bin/hgTrackUi?db=dipOrd1&g=uniprot" + target=_blank>(dipOrd1)</a></li> + <li>Lamprey <a href="../cgi-bin/hgTrackUi?db=petMar3&g=uniprot" + target=_blank>(petMar3)</a></li> + <li>Lancelet <a href="../cgi-bin/hgTrackUi?db=braFlo1&g=uniprot" + target=_blank>(braFlo1)</a></li> + <li>Lizard <a href="../cgi-bin/hgTrackUi?db=anoCar2&g=uniprot" + target=_blank>(anoCar2)</a></li> + <li>Malayan flying lemur <a href="../cgi-bin/hgTrackUi?db=galVar1&g=uniprot" + target=_blank>(galVar1)</a></li> + <li>Manatee <a href="../cgi-bin/hgTrackUi?db=triMan1&g=uniprot" + target=_blank>(triMan1)</a></li> + <li>Marmoset <a href="../cgi-bin/hgTrackUi?db=calJac3&g=uniprot" + target=_blank>(calJac3)</a></li> + <li>Medaka <a href="../cgi-bin/hgTrackUi?db=oryLat2&g=uniprot" + target=_blank>(oryLat2)</a></li> + <li>Medium ground finch <a href="../cgi-bin/hgTrackUi?db=geoFor1&g=uniprot" + target=_blank>(geoFor1)</a></li> + <li>Megabat <a href="../cgi-bin/hgTrackUi?db=pteVam1&g=uniprot" + target=_blank>(pteVam1)</a></li> + <li>Microbat <a href="../cgi-bin/hgTrackUi?db=myoLuc2&g=uniprot" + target=_blank>(myoLuc2)</a></li> + <li>Minke whale <a href="../cgi-bin/hgTrackUi?db=balAcu1&g=uniprot" + target=_blank>(balAcu1)</a></li> + <li>Mouse <a href="../cgi-bin/hgTrackUi?db=mm10&g=uniprot" + target=_blank>(mm10)</a></li> + <li>Mouse <a href="../cgi-bin/hgTrackUi?db=mm9&g=uniprot" + target=_blank>(mm9)</a></li> + <li>Mouse lemur <a href="../cgi-bin/hgTrackUi?db=micMur2&g=uniprot" + target=_blank>(micMur2)</a></li> + <li>Naked mole-rat <a href="../cgi-bin/hgTrackUi?db=hetGla2&g=uniprot" + target=_blank>(hetGla2)</a></li> + <li>Nile tilapia <a href="../cgi-bin/hgTrackUi?db=oreNil2&g=uniprot" + target=_blank>(oreNil2)</a></li> + </ul></div> + <div class="col-sm-4"> + <ul> + <li>Opossum <a href="../cgi-bin/hgTrackUi?db=monDom5&g=uniprot" + target=_blank>(monDom5)</a></li> + <li>Orangutan <a href="../cgi-bin/hgTrackUi?db=ponAbe3&g=uniprot" + target=_blank>(ponAbe3)</a></li> + <li>P. pacificus <a href="../cgi-bin/hgTrackUi?db=priPac1&g=uniprot" + target=_blank>(priPac1)</a></li> + <li>Painted turtle <a href="../cgi-bin/hgTrackUi?db=chrPic1&g=uniprot" + target=_blank>(chrPic1)</a></li> + <li>Panda <a href="../cgi-bin/hgTrackUi?db=ailMel1&g=uniprot" + target=_blank>(ailMel1)</a></li> + <li>Pig <a href="../cgi-bin/hgTrackUi?db=susScr3&g=uniprot" + target=_blank>(susScr3)</a></li> + <li>Pika <a href="../cgi-bin/hgTrackUi?db=ochPri3&g=uniprot" + target=_blank>(ochPri3)</a></li> + <li>Platypus <a href="../cgi-bin/hgTrackUi?db=ornAna2&g=uniprot" + target=_blank>(ornAna2)</a></li> + <li>Proboscis monkey <a href="../cgi-bin/hgTrackUi?db=nasLar1&g=uniprot" + target=_blank>(nasLar1)</a></li> + <li>Rabbit <a href="../cgi-bin/hgTrackUi?db=oryCun2&g=uniprot" + target=_blank>(oryCun2)</a></li> + <li>Rat <a href="../cgi-bin/hgTrackUi?db=rn6&g=uniprot" + target=_blank>(rn6)</a></li> + <li>Rhesus <a href="../cgi-bin/hgTrackUi?db=rheMac8&g=uniprot" + target=_blank>(rheMac8)</a></li> + <li>Rock hyrax <a href="../cgi-bin/hgTrackUi?db=proCap1&g=uniprot" + target=_blank>(proCap1)</a></li> + <li>S. cerevisiae <a href="../cgi-bin/hgTrackUi?db=sacCer2&g=uniprot" + target=_blank>(sacCer2)</a></li> + <li>S. cerevisiae <a href="../cgi-bin/hgTrackUi?db=sacCer3&g=uniprot" + target=_blank>(sacCer3)</a></li> + <li>S. purpuratus <a href="../cgi-bin/hgTrackUi?db=strPur2&g=uniprot" + target=_blank>(strPur2)</a></li> + <li>SARS-CoV-2 <a href="../cgi-bin/hgTrackUi?db=wuhCor1&g=uniprot" + target=_blank>(wuhCor1)</a></li> + <li>Sea hare <a href="../cgi-bin/hgTrackUi?db=aplCal1&g=uniprot" + target=_blank>(aplCal1)</a></li> + <li>Sheep <a href="../cgi-bin/hgTrackUi?db=oviAri3&g=uniprot" + target=_blank>(oviAri3)</a></li> + <li>Sheep <a href="../cgi-bin/hgTrackUi?db=oviAri4&g=uniprot" + target=_blank>(oviAri4)</a></li> + <li>Shrew <a href="../cgi-bin/hgTrackUi?db=sorAra2&g=uniprot" + target=_blank>(sorAra2)</a></li> + <li>Sloth <a href="../cgi-bin/hgTrackUi?db=choHof1&g=uniprot" + target=_blank>(choHof1)</a></li> + <li>Southern sea otter <a href="../cgi-bin/hgTrackUi?db=enhLutNer1&g=uniprot" + target=_blank>(enhLutNer1)</a></li> + <li>Squirrel <a href="../cgi-bin/hgTrackUi?db=speTri2&g=uniprot" + target=_blank>(speTri2)</a></li> + <li>Squirrel monkey <a href="../cgi-bin/hgTrackUi?db=saiBol1&g=uniprot" + target=_blank>(saiBol1)</a></li> + <li>Stickleback <a href="../cgi-bin/hgTrackUi?db=gasAcu1&g=uniprot" + target=_blank>(gasAcu1)</a></li> + <li>Tarsier <a href="../cgi-bin/hgTrackUi?db=tarSyr2&g=uniprot" + target=_blank>(tarSyr2)</a></li> + <li>Tasmanian devil <a href="../cgi-bin/hgTrackUi?db=sarHar1&g=uniprot" + target=_blank>(sarHar1)</a></li> + <li>Tenrec <a href="../cgi-bin/hgTrackUi?db=echTel2&g=uniprot" + target=_blank>(echTel2)</a></li> + <li>Tetraodon <a href="../cgi-bin/hgTrackUi?db=tetNig2&g=uniprot" + target=_blank>(tetNig2)</a></li> + <li>Tibetan frog <a href="../cgi-bin/hgTrackUi?db=nanPar1&g=uniprot" + target=_blank>(nanPar1)</a></li> + <li>Tree shrew <a href="../cgi-bin/hgTrackUi?db=tupBel1&g=uniprot" + target=_blank>(tupBel1)</a></li> + <li>Turkey <a href="../cgi-bin/hgTrackUi?db=melGal5&g=uniprot" + target=_blank>(melGal5)</a></li> + <li>Wallaby <a href="../cgi-bin/hgTrackUi?db=macEug2&g=uniprot" + target=_blank>(macEug2)</a></li> + <li>White rhinoceros <a href="../cgi-bin/hgTrackUi?db=cerSim1&g=uniprot" + target=_blank>(cerSim1)</a></li> + <li>X. tropicalis <a href="../cgi-bin/hgTrackUi?db=xenTro9&g=uniprot" + target=_blank>(xenTro9)</a></li> + <li>Zebra finch <a href="../cgi-bin/hgTrackUi?db=taeGut2&g=uniprot" + target=_blank>(taeGut2)</a></li> + <li>Zebrafish <a href="../cgi-bin/hgTrackUi?db=danRer10&g=uniprot" + target=_blank>(danRer10)</a></li> + <li>Zebrafish <a href="../cgi-bin/hgTrackUi?db=danRer7&g=uniprot" + target=_blank>(danRer7)</a></li> + </ul></div> +</div></div> +<p> +Thanks to UniProt for providing these annotations, as well as +Maximilian Haeussler and Lou Nassar of the UCSC Genome Browser group for their +work in creating and releasing these tracks.</p> + <a name="111620"></a> <h2>Nov. 16, 2020 Genome in a Bottle tracks now available for human</h2> <p> We are pleased to announce the release of three new tracks from the <a href="https://www.nist.gov/programs-projects/genome-bottle" target="_blank">Genome in a Bottle Consortium (GIAB)</a> available for human assemblies, <a href="../cgi-bin/hgTrackUi?db=hg19&c=chrX&g=giab" target="_blank">GRCh37/hg19</a> and <a href="../cgi-bin/hgTrackUi?db=hg38&c=chrX&g=giab" target="_blank">GRCh38/hg38</a>. GIAB is an open, public consortium hosted by <a href="https://www.nist.gov/" target="_blank">NIST</a>. The priority of GIAB is to develop reference standards, reference methods, and reference data by authoritative characterization of human genomes for use in benchmarking, including analytical validation and technology development that will support translation of whole human genome sequencing to clinical practice. The sole purpose of this work is to provide validated variants and regions to enable technology and bioinformatics developers to benchmark and optimize their detection methods. </p>