ff6abb3b7f34ac95c918dd1f03a9e5d52c59fc20
angie
  Thu Nov 19 12:58:52 2020 -0800
Very incomplete parser for Google's protobuf3 -- sufficient to read file generated by Yatish Turakhia's usher --save-mutation-annotated-tree.  refs #25943

diff --git src/hg/lib/makefile src/hg/lib/makefile
index 05e164b..355d613 100644
--- src/hg/lib/makefile
+++ src/hg/lib/makefile
@@ -71,31 +71,31 @@
     hgGene.o hic.o hicUi.o hgMaf.o hgRelate.o hgSeq.o hgdpGeo.o hPrint.o hVarSubst.o hvGfx.o \
     HInv.o hubConnect.o hubSearchText.o hui.o humanParalog.o hubPublic.o \
     imageClone.o indelShift.o interact.o interactUi.o isochores.o ispyTables.o \
     itemAttr.o itemConf.o itemDetailsHtml.o jalview.o \
     jaxOrtholog.o jaxQTL.o jaxQTL3.o jksql.o joiner.o jsHelper.o kg1ToKg2.o \
     jgiGene.o joinMixer.o \
     kgAlias.o kgColor.o kgProtAlias.o kgXref.o knownInfo.o knownMore.o knownToSuper.o \
     lav.o ld.o ld2.o lfs.o liftOver.o liftOverChain.o liftUp.o \
     llaInfo.o longRange.o lrg.o lsSnpPdb.o lsSnpPdbChimera.o mafFrames.o mafGene.o mafSummary.o \
     makeItemsItem.o mammalPsg.o mapSts.o mathWig.o \
     mcnBreakpoints.o mdb.o metaChromGraph.o microarray.o \
     minChromSize.o minGeneInfo.o mrnaMisMatch.o \
     mouseOrtho.o mouseSyn.o mouseSynWhd.o mysqlTableStatus.o ncbiRefLink.o \
     ncbiRefSeqLink.o netAlign.o netCart.o nonCodingUi.o omimTitle.o ooUtils.o \
     orthoAlleles.o pal.o pbStamp.o pcrResult.o pepPred.o \
-    peptideAtlasPeptide.o plasEndPairs.o polyGenotype.o protFeat.o pscreen.o \
+    peptideAtlasPeptide.o plasEndPairs.o polyGenotype.o protFeat.o protobuf.o pscreen.o \
     pseudoGeneLink.o pslReader.o pslWScore.o putaInfo.o qaSeq.o \
     rangeTreeFile.o rankProp.o recombRate.o recombRateRat.o recombRateMouse.o \
     refLink.o refSeqStatus.o \
     rgdQtl.o riken.o rhMapZfishInfo.o rikenBest.o rikenCluster.o rmskOut.o \
     rmskAlign.o rmskJoined.o rmskOut2.o \
     rnaFold.o rnaGene.o rnaGroup.o rnaHybridization.o rnaPLFold.o tRNAs.o gbRNAs.o snoRNAs.o lowelabPfamHit.o lowelabArkinOperonScore.o lowelabTIGROperonScore.o \
     rnaSecStr.o tfbsConsFactors.o \
     roughAli.o transMapStuff.o transMapInfo.o transMapGene.o transMapSrc.o \
     sage.o sageCounts.o sageExp.o samAlignment.o sample.o \
     sanger22extra.o sangerGene.o sangerGeneToWBGeneID.o  sargassoSeaXra.o \
     scopDes.o scoredRef.o search.o seqWindow.o sessionThumbnail.o sgdAbundance.o \
     sgdClone.o sgdDescription.o sgdOther.o simpleNucDiff.o simpleRepeat.o snakeUi.o \
     snp.o snp125.o snp125CodingCoordless.o snp132Ext.o snpExceptions.o snpFasta.o snpMap.o snpTmp.o \
     snpUi.o snp125Exceptions.o snp125Ui.o softPromoter.o softberryHom.o soTerm.o \
     spDb.o splignAlign.o sqlSanity.o stanMad.o stsAlias.o \