e14c2761ca01d8175578df87bd5311b5c0442bfb angie Thu Nov 19 13:04:01 2020 -0800 New CGI hgPhyloPlace: place SARS-CoV-2 genomes in fasta or VCF on phylogenetic tree using Yatish Turakhia's UShER program; add subtree custom tracks and Nextstrain linkouts to visualize results. refs #25943 diff --git src/hg/makefile src/hg/makefile index 2faa3c1..066942d 100644 --- src/hg/makefile +++ src/hg/makefile @@ -1,29 +1,29 @@ # Build all directories in utils kentSrc = .. include ${kentSrc}/inc/localEnvironment.mk BROWSER_BINS=cartReset das hgBlat makeDb/hgCgiData hgCollection hgConvert \ hgHubConnect hgGateway hgGene hgGenome hgIntegrator hgLogin hgPcr \ hgSession hgSuggest hgTables hgTracks hgTrackUi hgUserSuggestion \ hgc hgApi cartDump near/hgNear hgLiftOver hgLinkIn hgVai \ visiGene/hgVisiGene hgMenubar hgPublicSessions \ encode/hgEncodeDataVersions encode/hgEncodeVocab encode/hgEncodeApi \ phyloPng hgCustom hgPal hgFileUi hgFileSearch makeDb/hgCgiData \ js htdocs/style hgMirror hgBeacon hgGtexTrackSettings pyLib \ - hgGeneGraph hgs hubApi + hgGeneGraph hgs hubApi hgPhyloPlace ifdef LOWELAB BROWSER_BINS += $(HOME)/lowelab/src/browser/tooltip $(HOME)/lowelab/src/browser/chooseorg endif BROWSER_LOADERS = makeDb/hgLoadBed makeDb/hgLoadWiggle makeDb/hgLoadMaf utils/pslToBigPsl utils/hubCheck ifneq ($(findstring $(shell hostname),hgwdev hgwbeta),) ENCODE_FILES = encode3/encodeDataWarehouse endif TEST_DIRS = lib autoDtd autoSql blastToPsl checkTableCoords embossToPsl \ genePredSingleCover genePredHisto genePredToBed genePredToGtf \ genePredToMafFrames gbGetEntries hgGetAnn liftAcross liftOver \