7efd3e53fb60cf072cd5349e65a01aec807b71f8
hiram
  Mon Nov 16 15:49:20 2020 -0800
LRG outlinks should go to http instead of ftp refs #24672

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index ddb57d9..b12089f 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -82,31 +82,31 @@
 
     track hiSeqDepthTop10Pct
     parent hiSeqDepth
     shortLabel Top 0.10 Depth
     longLabel Top 0.10 of Read Depth Distribution
     priority 5
 
 track lrg
 shortLabel LRG Regions
 longLabel Locus Reference Genomic (LRG) Sequences Mapped to $date Assembly
 group map
 visibility hide
 type bigBed 12 +
 noScoreFilter .
 urlLabel Link to LRG report: 
-url ftp://ftp.ebi.ac.uk/pub/databases/lrgex/$$.xml
+url http://ftp.ebi.ac.uk/pub/databases/lrgex/$$.xml
 urls hgncId="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" ncbiAcc="https://www.ncbi.nlm.nih.gov/nuccore/$$"
 baseColorDefault diffBases
 baseColorUseSequence lrg
 indelDoubleInsert on
 indelQueryInsert on
 showDiffBasesAllScales .
 color 72,167,38
 
 track gad
 shortLabel GAD View
 longLabel Genetic Association Studies of Complex Diseases and Disorders
 group phenDis
 visibility hide
 color 200,0,0
 type bed 4
@@ -3181,53 +3181,53 @@
 urls ncbiTranscript=https://www.ncbi.nlm.nih.gov/nuccore/$$ ensemblTranscript=http://www.ensembl.org/Multi/Search/Results?site=ensembl_all;q=$$ ncbiProtein=https://www.ncbi.nlm.nih.gov/protein/$$ ensemblProtein=http://www.ensembl.org/Multi/Search/Results?site=ensembl_all;q=$$
 cdsTable lrgCds
 cdnaTable lrgCdna
 pepTable lrgPep
 baseColorDefault diffCodons
 baseColorUseCds table lrgCds
 baseColorUseSequence table lrgCdna
 indelDoubleInsert on
 indelQueryInsert on
 showDiffBasesAllScales .
 showDiffBasesMaxZoom 10000.0
 showCdsAllScales .
 showCdsMaxZoom 10000.0
 color 54,125,29
 urlLabel Link to LRG transcript:
-url ftp://ftp.ebi.ac.uk/pub/databases/lrgex/$$.xml#transcripts_anchor
+url http://ftp.ebi.ac.uk/pub/databases/lrgex/$$.xml#transcripts_anchor
 
 track lrgTranscriptAli
 shortLabel LRG Transcripts
 longLabel Locus Reference Genomic (LRG) Fixed Transcript Annotations
 group genes
 visibility hide
 type psl .
 cdsTable lrgCds
 cdnaTable lrgCdna
 pepTable lrgPep
 baseColorDefault diffCodons
 baseColorUseCds table lrgCds
 baseColorUseSequence table lrgCdna
 indelDoubleInsert on
 indelQueryInsert on
 showDiffBasesAllScales .
 showDiffBasesMaxZoom 10000.0
 showCdsAllScales .
 showCdsMaxZoom 10000.0
 color 54,125,29
 urlLabel Link to LRG transcript:
-url ftp://ftp.ebi.ac.uk/pub/databases/lrgex/$$.xml#transcripts_anchor
+url http://ftp.ebi.ac.uk/pub/databases/lrgex/$$.xml#transcripts_anchor
 
 track affyHuEx1
 shortLabel Affy HuEx 1.0
 longLabel Affymetrix Human Exon 1.0 Probe Sets
 group expression
 visibility hide
 url http://www.affymetrix.com/analysis/netaffx/exon/probe_set.affx?pk=1:$$
 urlLabel Netaffx Link:
 useScore 1
 type bed 6 .
 
 track affyHumanExon
 shortLabel Affy All Exon
 longLabel Affymetrix All Exon Chips
 group expression