Commits for hiram

v408_preview to v408_preview2 (2020-11-23 to 2020-11-30) v408

95a26c9ef09eae3c8d6290eb92712a4c7f31d9c6 Tue Nov 24 12:20:03 2020 -0800

• prepare for future with different track types and different item data structures refs #21980
  • src/hg/hgTracks/wigTrack.c - lines changed 4, context: html, text, full: html, text
  • src/hg/js/hgTracks.js - lines changed 41, context: html, text, full: html, text

03456e3b8643743836b3c76c667ddd8ed6d4af82 Thu Nov 26 22:26:55 2020 -0800

• fixup chromAlias build for NCBI named assemblies and have duplicates refs #24396
  • src/hg/utils/automation/asmHubChromAlias.pl - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/automation/doAssemblyHub.pl - lines changed 2, context: html, text, full: html, text

0a7c7349c6768dfdd3433781d087a44cfe03cd74 Sun Nov 29 00:48:48 2020 -0800

• correctly doing chromAlias for refSeq not UCSC names with duplicates refs #24396
  • src/hg/utils/automation/asmHubChromAlias.pl - lines changed 16, context: html, text, full: html, text
  • src/hg/utils/automation/doAssemblyHub.pl - lines changed 1, context: html, text, full: html, text

4e32052e618df259f0c0d77434641db7793e41d1 Sun Nov 29 23:24:26 2020 -0800

• correctly remove duplicate sequences from NCBI rm.out refs #24396
  • src/hg/utils/automation/doAssemblyHub.pl - lines changed 4, context: html, text, full: html, text
  • src/hg/utils/automation/doRepeatMasker.pl - lines changed 22, context: html, text, full: html, text