834f8db0db217654d786090bd9e25ad92292ee4e
braney
  Wed Jan 13 11:20:37 2021 -0800
ongoing work on UCSC genes

diff --git src/hg/lib/gencodeBGP.as src/hg/lib/gencodeBGP.as
index 3b2ee1d..6e19516 100644
--- src/hg/lib/gencodeBGP.as
+++ src/hg/lib/gencodeBGP.as
@@ -1,31 +1,31 @@
 table gencodeBGP
 "GENCODE bigGenePred"
    (
    string chrom;       "Reference sequence chromosome or scaffold"
    uint   chromStart;  "Start position in chromosome"
    uint   chromEnd;    "End position in chromosome"
-   string name;        "Ensembl Id"
+   string name;        "Ensembl ID"
    uint score;         "Score (0-1000)"
    char[1] strand;     "+ or - for strand"
    uint thickStart;    "Start of where display should be thick (start codon)"
    uint thickEnd;      "End of where display should be thick (stop codon)"
    uint reserved;       "RGB value (use R,G,B string in input file)"
    int blockCount;     "Number of blocks"
    int[blockCount] blockSizes; "Comma separated list of block sizes"
    int[blockCount] chromStarts; "Start positions relative to chromStart"
-   string name2;       "UCSC Genes id"
+   string name2;       "UCSC Genes ID"
    string cdsStartStat; "Status of CDS start annotation (none, unknown, incomplete, or complete)"
    string cdsEndStat;   "Status of CDS end annotation (none, unknown, incomplete, or complete)"
    int[blockCount] exonFrames; "Exon frame {0,1,2}, or -1 if no frame for exon"
    string type;        "Transcript type"
    string geneName;    "Gene Symbol"
    string geneName2;   "UniProt display ID"
    string geneType;    "Gene type"
 
 # high level type of transcript (from gencodeAttrs)"
    string transcriptClass; "Transcript Class"
    string source; "Source of transcript (from gencodeTranscriptSource)"
    string transcriptType; "BioType of transcript (from gencodeAttrs)"
    string tag; "symbolic tags (from gencodeTags)"
    string level;           "support level, tsl1 is strongest support, tsl5 weakest, NA means not analyzed (from gencodeTranscriptionSupportLevel)"
 # tier:  all, basic, canonical