4661f6124645391aa86e70fa7b3c1b0677ebeb6b
chmalee
  Thu Jan 14 10:18:03 2021 -0800
Adding search and html for lrgBigPsl track, refs #24672

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index 1374ab8..b049f2a 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -3162,30 +3162,31 @@
 type bed 8 +
 noScoreFilter .
 urlLabel Laboratoire de Biologie Moleculaire Eucaryote:
 url http://www-snorna.biotoul.fr/plus.php?id=$$
 url2Label miRBase:
 #url2 http://microrna.sanger.ac.uk/cgi-bin/sequences/mirna_entry.pl?id=$$
 url2 http://www.mirbase.org/cgi-bin/query.pl?terms=$$
 dataVersion miRBase Release 13.0 (March 2009) and snoRNABase Version 3
 
 track lrgBigPsl
 shortLabel LRG Transcripts
 longLabel Locus Reference Genomic (LRG) Fixed Transcript Annotations
 group genes
 visibility hide
 type bigPsl
+html lrgTranscriptAli
 mouseOverField mouseOver
 skipFields mouseOver
 skipEmptyFields on
 urls ncbiTranscript=https://www.ncbi.nlm.nih.gov/nuccore/$$ ensemblTranscript=http://www.ensembl.org/Multi/Search/Results?site=ensembl_all;q=$$ ncbiProtein=https://www.ncbi.nlm.nih.gov/protein/$$ ensemblProtein=http://www.ensembl.org/Multi/Search/Results?site=ensembl_all;q=$$
 altColor 127,127,127
 baseColorDefault genomicCodons
 baseColorUseSequence lfExtra
 indelDoubleInsert on
 indelPolyA on
 indelQueryInsert on
 showDiffBasesAllScales .
 showDiffBasesMaxZoom 10000.0
 showCdsAllScales .
 showCdsMaxZoom 10000.0
 color 54,125,29
@@ -4062,36 +4063,45 @@
 searchType bed
 termRegex Hs\.[0-9]+
 searchPriority 20
 
 searchTable uniGene_3
 searchType psl
 termRegex Hs\.[0-9]+
 searchPriority 20
 
 searchTable HInvGeneMrna
 searchMethod exact
 searchType psl
 termRegex HIT[0-9]{9,9}
 searchPriority 50
 
+searchTable lrgBigPsl
+searchMethod exact
+searchType bigBed
+termRegex LRG_[0-9]+t[0-9]+
+semiShortCircuit 1
+searchPriority 50
+release alpha
+
 searchTable lrgTranscriptAli
 searchMethod exact
 searchType psl
 termRegex LRG_[0-9]+t[0-9]+
 semiShortCircuit 1
 searchPriority 50
+release beta,public
 
 searchName lrgTranscriptAliNoTNum
 searchTable lrgTranscriptAli
 query select tName, tStart, tEnd, qName from %s where qName like '%st%%'
 termRegex LRG_[0-9]+
 dontCheck LRG_[0-9]+t[0-9+]
 semiShortCircuit 1
 searchPriority 50
 
 searchTable acescan
 searchMethod fuzzy
 searchType genePred
 termRegex .*_pred\.[0-9]+
 searchPriority 50