Displayed items are colored by GWAS effect: red for positive (harmful) effect, blue for negative (protective) effect. The height ('lollipop stem') of the item is based on statistical significance (pvalue) or effect size (beta coefficient). For better visualization of the data, only SNPs with p-values smaller than 1e-3 are displayed by default.
For tracks based on effect size, the color saturation indicates statistical significance: p-values smaller than 1e-5 are brightly colored (bright red , bright blue ), -those with less significance (p >= 1e-5) are paler (light red +those with less significance (p >= 1e-5) are paler (light red , light blue ). For track based on pvalue, the color brightness reflects the effect size.
Each track has separate display controls and data can be filtered according to the number of studies, minimum -log10 p-value, and the effect size (beta coefficient), using the track Configure options.
Mouseover on items shows the rs ID (or chrom:pos if none assigned), both the non-effect and effect alleles, the effect size (beta coefficient), the p-value, and the number of studies. Additional information on each variant can be found on the details page by clicking on the item.