af1498d72e78e14d8b17ad2549f895611ead0cf2 dschmelt Fri Jan 8 16:17:41 2021 -0800 Code Review refs #26740 diff --git src/hg/makeDb/trackDb/human/covidHgiGwasR4.html src/hg/makeDb/trackDb/human/covidHgiGwasR4.html index f528b99..4e03962 100644 --- src/hg/makeDb/trackDb/human/covidHgiGwasR4.html +++ src/hg/makeDb/trackDb/human/covidHgiGwasR4.html @@ -43,31 +43,31 @@ <p> Displayed items are colored by <b>GWAS effect</b>: red for positive (harmful) effect, blue for negative (protective) effect. The height ('lollipop stem') of the item is based on statistical significance (<b>pvalue</b>) or effect size (<b>beta coefficient</b>). For better visualization of the data, only SNPs with p-values smaller than 1e-3 are displayed by default.</p> <p> For tracks based on effect size, the color saturation indicates statistical significance: p-values smaller than 1e-5 are brightly colored (bright red <span style='background-color: #ff0000;'> </span> , bright blue <span style='background-color: #0000ff;'> </span> ), -those with less significance (p >= 1e-5) are paler (light red +those with less significance (p >= 1e-5) are paler (light red <span style='background-color: #ffa0a0;'> </span> , light blue <span style='background-color: #a0a0ff;'> </span> ). For track based on pvalue, the color brightness reflects the effect size.</p> <p> Each track has separate display controls and data can be filtered according to the <b>number of studies</b>, <b>minimum -log10 p-value</b>, and the <b>effect size (beta coefficient)</b>, using the track <b>Configure</b> options.</p> <p> <b>Mouseover</b> on items shows the rs ID (or chrom:pos if none assigned), both the non-effect and effect alleles, the effect size (beta coefficient), the p-value, and the number of studies. Additional information on each variant can be found on the details page by clicking on the item. </p>