cd11b2eb813eb98b57ab3bbebd32c9a86737c9d5
max
  Mon Jan 18 02:45:56 2021 -0800
adding CADD track, refs #18492

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index b049f2a..93e59f0 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -20,30 +20,33 @@
 # GeneHancer from Weizmann labs
 include trackDb.geneHancer.ra
 
 # NCBI ClinVar
 include trackDb.clinvar.ra
 
 # NCBI dbVar
 include trackDb.dbVar.ra
 
 # ClinGen
 include trackDb.clinGen.ra
 
 # Genome In a Bottle
 include trackDb.giab.ra
 
+# CADD scores
+include cadd.ra
+
 track cytoBandIdeo
 shortLabel Chromosome Band (Ideogram)
 longLabel Chromosome Bands Localized by FISH Mapping Clones (for Ideogram)
 group map
 visibility dense
 type bed 4 +
 
 track cytoBand
 shortLabel Chromosome Band
 longLabel Chromosome Bands Localized by FISH Mapping Clones
 group map
 visibility hide
 type bed 4 +
 
 track hiSeqDepth
@@ -187,50 +190,30 @@
 
         track avada
         shortLabel Avada Variants
         longLabel Avada Variants extracted from full text publications
         visibility dense
         type bigBed 9 +
         bigDataUrl /gbdb/$D/bbi/avada.bb
         noScoreFilter on
         exonNumbers off
         #itemRgb on
         dataVersion release 1
         parent varsInPubs pack
         urls pmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" doi="https://doi.org/$$" ensId="http://grch37.ensembl.org/Homo_sapiens/Gene/Summary?g=$$" entrezs="https://www.ncbi.nlm.nih.gov/gene/$$" refSeq="https://www.ncbi.nlm.nih.gov/nuccore/$$"
         mouseOverField _mouseOver
 
-track pathoPred
-type bigWig
-longLabel Pathogenicity predictions
-shortLabel Pathogenicity
-color 112,172,192
-visibility hide
-superTrack on
-group phenDis
-
-        track cadd
-        type bigWig
-        longLabel CADD scores version 1.4
-        viewLimits 0:30
-        color 100,130,160
-        bigDataUrl /gbdb/$D/bbi/CADD-v1.4.bw
-        viewLimitsMax 0:100
-        shortLabel CADD
-        visibility full
-        parent pathoPred on
-
 track caseControl
 compositeTrack on
 shortLabel Case Control
 longLabel Case Control Consortium
 group phenDis
 visibility hide
 type chromGraph
 minMax 0,15
 linesAt 5,10
 
     track cccTrendPvalBd
     parent caseControl
     shortLabel CCC Bipolar Dis
     longLabel Case Control Consortium Bipolar Disorder Trend -log10 P-value
     priority 1