7dea7c645f8ce8892d6d4d162a3cf8295309062f
chmalee
  Fri Dec 11 11:22:24 2020 -0800
Bringing repo copies of omim scripts up to date with the working versions, refs #18151

diff --git src/hg/utils/otto/gwas/checkGwas.sh src/hg/utils/otto/gwas/checkGwas.sh
index 0edfea5..7e5643b 100755
--- src/hg/utils/otto/gwas/checkGwas.sh
+++ src/hg/utils/otto/gwas/checkGwas.sh
@@ -84,19 +84,24 @@
 # match other archive date formats
 dateDir=`date +%F`
 if [ ! -d ${WORKDIR}/archive ]; then
     mkdir -p ${WORKDIR}/archive
 fi
 cd ${WORKDIR}/archive
 for db in "hg18" "hg19" "hg38"
 do
     mkdir -p ${db}/${dateDir}
     cd ${db}/${dateDir}
     printf "This directory contains a backup of the GWAS Catalog track data tables built on %s\n" "${dateDir}" > README 
     hgsql --raw -Ne "show create table gwasCatalog" ${db} > gwasCatalog.sql
     hgsql -Ne "select * from gwasCatalog" ${db} | gzip >  gwasCatalog.txt.gz
 done
 
+# testing new archival script
+cd ${WORKDIR}/${today}
+/cluster/home/chmalee/bin/scripts/archiveTracks.sh -t "gwasCatalog" /hive/data/inside/archive/ "hg38 hg19 hg18" "GWAS_Catalog" 2>archiveTracks.${dateDir}.err
+printf "archiveTracks.sh for gwas catalog exit status %d\n" "$?"
+
 
 echo "Gwas Installed `date`"